Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6476 104 2e-17 seq7367 91.5 1e-13 seq34431 89.7 4e-13 seq6559 84.2 2e-11 >seq6476 Length=10381176 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || || |||||||| ||| ||| |||| | | Sbjct 5656678 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACCATCACCCTCGAGGTGGAAGCTTCT 5656737 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || || || ||||||||| | || ||||||| Sbjct 5656738 GACACTATAGAGAATGTCAAAGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAA 5656797 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| ||||| ||||| || ||| || |||| | | |||||||| Sbjct 5656798 CAACGTTTGATCTTTGCTGGCAAGCAACTAGAGGATGGCAGAACTCTTTCTGATTACAAC 5656857 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| |||| |||| | || ||||| Sbjct 5656858 ATCCAGAAGGAATCTACGCTTCATCTGGTTCTACGTCTTCGCGGAGG 5656904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || ||||||||||| ||| |||| ||| || | Sbjct 5657134 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 5657193 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| || |||||||| | || |||||| Sbjct 5657194 GACACAATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 5657253 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | || || || ||||| || |||||||| || ||| | |||||||||| Sbjct 5657254 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGACGGCAGAACCCTTTCCGATTACAAC 5657313 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| || ||| | || |||||| | || ||||| Sbjct 5657314 ATCCAAAAAGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 5657360 >seq7367 Length=54923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||| | || ||||| ||||| ||| |||||||| || ||| || | ||| Sbjct 20422 GATCAACAAAGATTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGGACTCTGTCGGAT 20363 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| ||||| ||| | ||| ||||||| || || ||||| || Sbjct 20362 TATAACATCCAGAAAGAATCCACTTTACACTTGGTGTTGCGCTTGCGAGGCGG 20310 >seq34431 Length=440 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | ||| |||||||| | || || ||||| ||||| ||||| ||| Sbjct 68 GACAAAGAAGGCATTCCCCCGGATCAACAGCGTCTGATTTTTGCCGGCAAGCAACTCGAA 127 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| | | ||||| || ||||| ||||||||||| |||||| |||| | Sbjct 128 GATGGCAGGACTCTTTCAGATTATAACATTCAAAAGGAATCTACACTTCACCTGGTTCTG 187 Query 29175 CGATTACGAGGAGG 29188 || | |||||||| Sbjct 188 CGTCTTCGAGGAGG 201 >seq6559 Length=1815223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || || |||||||| | || || ||||| ||| | |||||||| Sbjct 1624735 AAGCAAAAA-TTCAGGACAAAGAAGGCATTCCACCGGACCAACAGAGATTGATCTTTGCC 1624793 Query 29100 GGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157 || ||||| || || ||| || | ||| | | || |||||||||||||||||||||| Sbjct 1624794 GGAAAACAGCTCGAGGATGGTCGCACACTTT--CTGACTACAATATTCAGAAGGAATCTA 1624851 Query 29158 CTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || | || ||||| | || ||||| || || Sbjct 1624852 CTTTGCATTTGGTGCTCCGTTTACGTGGTGG 1624882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427929919803140