Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6559 102 7e-17 seq34431 82.4 6e-11 >seq6559 Length=1815223 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||| |||| ||| | |||||| ||||| || || || ||||| | Sbjct 1624428 TTCCACCGCGCAGGCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGG 1624369 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| || ||||||| ||||| || || || | || | | |||||| || | Sbjct 1624368 ACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCG 1624309 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| ||||| | ||| || || | ||| Sbjct 1624308 GGATTCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTGTCGGAAGCCTCAA 1624249 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || |||||||| || |||||||| || || ||||| ||||| Sbjct 1624248 CTTCAAGAGTTATGGTCTTCCCAGTTAACGTCTTCACGAATATCTGCAT 1624200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | |||| |||||| ||||| || ||||||||||| || || | Sbjct 1625338 CCACCACGAAGTCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAA 1625279 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| |||||||| || || | || | ||||||||| || ||| Sbjct 1625278 AGCGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625219 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || || || ||| || | ||| || ||| | ||| Sbjct 1625218 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAACC 1625159 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || ||||| ||||| || || |||||||| Sbjct 1625158 TCCAGTGTGATGGTTTTTCCTGTTAAGGTTTTAACGAAAATTTGCAT 1625112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | || | ||||| ||||| ||||| |||||||| ||||| | | Sbjct 1625566 CCTCCGCGAAGTCTCAAAACAAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAC 1625507 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| |||||||| || || | || | ||||||||| || ||| Sbjct 1625506 AGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625447 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||| || | ||| || || | ||| Sbjct 1625446 ATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGATTGTGTCCGAAGCCTCAACC 1625387 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || || | ||| ||||| || || ||||| Sbjct 1625386 TCCAGTGTGATGGTTTTACCCGTGAGCGTCTTGACGAAAATCTGCAT 1625340 >seq34431 Length=440 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || |||| ||| | || ||||| ||||| ||||||||||| | Sbjct 429 CCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCGGAA 370 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | || || || || ||||| || |||| | | ||| || ||| ||| Sbjct 369 AGAGTTCTACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGGGGA 310 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| ||| || | | | || ||| || || | Sbjct 309 ATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACT 250 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | || ||||| |||||||| | ||||| || || ||||||||| Sbjct 249 TCGAGAGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421858880860208