Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6559 147 3e-30 seq24285 102 1e-16 seq6476 100 4e-16 seq61286 87.8 3e-12 seq7367 86.0 9e-12 >seq6559 Length=1815223 Score = 147 bits (162), Expect = 3e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || || ||||| || || || ||| | ||| ||||||| Sbjct 1624655 AATGCAGATCTTCGTTAAAACCCTGACAGGAAAGACCATCACTTTGGAGGTTGAAGCTTC 1624714 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| |||||||| || |||||||| || ||||| || || Sbjct 1624715 GGACACAATCGAGAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCGGACCA 1624774 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || ||||| |||||||| | |||||| |||| ||| | || || || Sbjct 1624775 ACAGAGATTGATCTTTGCCGGAAAACAGCTCGAGGATGGTCGCACACTTTCTGACTACAA 1624834 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || ||||| |||||||||||||| | |||||||| |||||||| ||| || Sbjct 1624835 TATTCAGAAGGAATCTACTTTGCATTTGGTGCTCCGTTTACGTGGTGGTATGCAAATTT 1624893 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | ||||| || || || || | || |||| || Sbjct 1624884 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 1624943 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||||||||| || ||||| || || || ||||| Sbjct 1624944 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAG 1625003 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||| ||||||||| | |||||| |||| || | |||||||| Sbjct 1625004 CAAAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGTCGCACGCTCTCTGATTATAAC 1625063 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| |||||||| || |||||||| ||||| | | || |||||||| ||| || Sbjct 1625064 ATTCAGAAAGAATCCACATTGCATTTAGTTTTGAGACTTCGCGGTGGTATGCAAATTT 1625121 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||||| ||||| || || | ||| |||| ||| | Sbjct 1625112 ATGCAAATTTTCGTTAAAACCTTAACAGGAAAAACCATCACACTGGAGGTTGAGGCATCT 1625171 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct 1625172 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCCCCAGATCAG 1625231 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || || || || ||||| | ||||| | || || | ||||| || Sbjct 1625232 CAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGACGGCCGCACGCTTTCTGATTACAAC 1625291 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || |||||||||||||| | | || |||||||| Sbjct 1625292 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGACTTCGTGGTGGTAT 1625341 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || | ||||| || ||||| ||| | ||| | ||||| Sbjct 1624427 AATGCAGATCTTCGTTAAAACTTTGACAGGAAAGACTATCACTTTGGAGGTCGAAGCTTC 1624486 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| ||| ||||| ||||||||||| || || |||||||| Sbjct 1624487 GGACACGATTGAGAATGTCAAAGCGAAGATTCAGGATAAAGAAGGCATCCCGCCTGATCA 1624546 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || || ||||| || | ||||| | || || || ||| || || Sbjct 1624547 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGGCGCACCTTGTCAGACTACAA 1624606 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || ||||| ||| | ||||||||| | || | || ||||| || Sbjct 1624607 TATCCAGAAGGAATCCACTCTCCATTTGGTTCTCCGACTGCGTGGTGGAAT 1624657 >seq24285 Length=372 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || || ||||| || || || ||| | ||| ||||||| Sbjct 86 AATGCAGATCTTCGTTAAAACCCTGACAGGAAAGACCATCACTTTGGAGGTTGAAGCTTC 145 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| ||| ||||| ||||||||||| || || |||||||| Sbjct 146 GGACACGATTGAGAATGTCAAAGCGAAGATTCAGGATAAAGAAGGCATCCCGCCTGATCA 205 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || || ||||| || | |||||| | || || | || || || Sbjct 206 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGGCGTACCCTGTCCGACTACAA 265 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || ||||| ||| | ||||||||| | || | || ||||| || Sbjct 266 TATCCAGAAGGAATCCACTCTCCATTTGGTTCTCCGACTGCGTGGTGGAAT 316 >seq6476 Length=10381176 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| || || | ||| | ||||| | Sbjct 5656678 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACCATCACCCTCGAGGTGGAAGCTTCT 5656737 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || || || ||||||||||| || || |||||| Sbjct 5656738 GACACTATAGAGAATGTCAAAGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAA 5656797 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || || ||| |||||||| | |||| | ||||| || Sbjct 5656798 CAACGTTTGATCTTTGCTGGCAAGCAACTAGAGGATGGCAGAACTCTTTCTGATTACAAC 5656857 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| ||||| ||||| | || || ||||| Sbjct 5656858 ATCCAGAAGGAATCTACGCTTCATCTGGTTCTACGTCTTCGCGGAGGTAT 5656907 >seq61286 Length=444 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| ||||| ||||| || || || ||||| || || | || ||||| || ||| Sbjct 308 AAAATTCAGGATAAGGAAGGAATCCCCCCAGATCAGCAGAGATTGATCTTTGCCGGTAAA 249 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || | ||||| || ||||| |||||||| || |||||| Sbjct 248 CAGCTCGAGGACGGCCGCACGCTTTCTGATTACAACATTCAGAAAGAATCCACGTTGCAT 189 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || | | || |||||||| Sbjct 188 TTGGTATTGAGACTTCGTGGTGGTAT 163 >seq7367 Length=54923 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || || |||||||||||||| | |||||||| || || ||||| || ||| | | Sbjct 20435 AGGAATTCCGCCTGATCAACAAAGATTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAG 20376 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || | |||||||| || || |||||||| ||||| || ||||| || || || || Sbjct 20375 GACTCTGTCGGATTATAACATCCAGAAAGAATCCACTTTACACTTGGTGTTGCGCTTGCG 20316 Query 124760 AGGTGGT 124766 ||| ||| Sbjct 20315 AGGCGGT 20309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754721432358400