Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7367 114 2e-20 seq61987 107 3e-18 seq61286 107 3e-18 seq34430 107 3e-18 seq6559 107 3e-18 seq6476 107 3e-18 seq34431 102 1e-16 >seq7367 Length=54923 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| |||||||| |||||||| || |||||||| || ||||| |||| ||| Sbjct 20325 AACACCAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCGACAGAGTCCTGCCATCT 20384 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| || |||||||||||||||||||| ||||| || ||||||||| Sbjct 20385 TCCAATTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGCGGAATTCCT 20435 >seq61987 Length=372 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || ||||| || || |||||||| || |||||||| || Sbjct 62 CCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAG 121 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||||||||| ||||| ||||| ||||||||||| || || Sbjct 122 AGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGG 181 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 182 ATTCCTTCCTTATCCTG 198 >seq61286 Length=444 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| ||||||||||| || || |||||||| || || ||||| ||| Sbjct 166 CCACCACGAAGTCTCAATACCAAATGCAACGTGGATTCTTTCTGAATGTTGTAATCAGAA 225 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || | ||||| || ||||| |||||||| |||||||| || || Sbjct 226 AGCGTGCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 285 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 286 ATTCCTTCCTTATCCTG 302 >seq34430 Length=319 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||| | | |||||||| | ||||| ||||| || |||||||||||| Sbjct 308 CCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAA 249 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || | ||| || || ||||||||||| | |||||||| || ||| Sbjct 248 AGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 189 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 188 ATGCCTTCTTTGTCTTG 172 >seq6559 Length=1815223 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || ||||| || || |||||||| || |||||||| || Sbjct 1625110 CCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAG 1625051 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||||||||| ||||| ||||| ||||||||||| || || Sbjct 1625050 AGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGG 1624991 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 1624990 ATTCCTTCCTTGTCTTG 1624974 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| ||||||||||| || ||||| || || ||||| || | | ||| || Sbjct 1624864 ACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCCTCG 1624805 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||| ||||| |||||||| || || ||||| ||||| |||||||| || || Sbjct 1624804 AGCTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCCGGTGGAATGCCTTCTTTGTCCTG 1624746 >seq6476 Length=10381176 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||| | | |||||||| | ||||| ||||| || |||||||||||| Sbjct 5657132 CCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAA 5657073 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || | ||| || || |||||||||| | ||||||||||| ||| Sbjct 5657072 AGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGGGGA 5657013 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 5657012 ATGCCTTCTTTGTCTTG 5656996 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | || |||| ||| | |||||||| || || || ||||| ||| Sbjct 5656904 CCTCCGCGAAGACGTAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGAA 5656845 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| ||| |||| ||| || |||||||| ||||| | ||| ||||| |||||| Sbjct 5656844 AGAGTTCTGCCATCCTCTAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 5656785 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 5656784 ATACCTTCTTTGTCCTG 5656768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| ||| || || || | ||||||||||| || || ||||| ||| Sbjct 5657360 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCGGAA 5657301 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || || | || || ||||| |||||||| | || |||||||| ||| Sbjct 5657300 AGGGTTCTGCCGTCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGTGGA 5657241 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 5657240 ATTCCTTCTTTGTCCTG 5657224 >seq34431 Length=440 Score = 102 bits (112), Expect = 1e-16 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| |||| ||| | | |||| || | |||||||| ||| || || ||||||||| Sbjct 203 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCCTTTTGA-ATGTTATAATCT 145 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||||||| |||| ||| || | ||| || || |||||||||| | || |||||||| Sbjct 144 GAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAGACGCTGTTGATCCGGG 85 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| ||||| Sbjct 84 GGAATGCCTTCTTTGTCTTG 65 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||| | | |||||||| | ||||| ||||| || ||||| || ||| Sbjct 429 CCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCGGAA 370 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | ||| || ||||| |||||||| | || |||||||| ||| Sbjct 369 AGAGTTCTACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGGGGA 310 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 309 ATGCCTTCTTTGTCTTG 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742803432104960