Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6559 111 1e-19 seq8074 91.5 1e-13 >seq6559 Length=1815223 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||||||||||||||| |||| ||| |||| || | Sbjct 1625547 CAAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCCTCGA 1625488 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| |||||||| ||||| | ||| || || || || | ||| ||||||||| || Sbjct 1625487 GCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATACCTTCCTTGTCCTGAA 1625428 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | ||||| | |||| ||||||| || || || || | Sbjct 1625427 TTTTGGCTTTGACATTTTCGATTGTGTCCGAAGCCTCAACCTCCAGTGTGATGGTTTTAC 1625368 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || ||||| || || || ||||| Sbjct 1625367 CCGTGAGCGTCTTGACGAAAATCTGCAT 1625340 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| || ||||||||||| |||||||| ||| |||| | || || Sbjct 1624864 ACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCCTCG 1624805 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||||||||| || ||||| | ||||||||| || || | || || |||||| | Sbjct 1624804 AGCTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCCGGTGGAATGCCTTCTTTGTCCTGA 1624745 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| || || | | | ||||| | | || ||||||| || || ||||| Sbjct 1624744 ATTTTTGCTTTGACATTCTCGATTGTGTCCGAAGCTTCAACCTCCAAAGTGATGGTCTTT 1624685 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || || ||||| ||||| Sbjct 1624684 CCTGTCAGGGTTTTAACGAAGATCTGCAT 1624656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || |||| ||||| ||| |||||||||||||||||||| |||| ||| || Sbjct 1625782 CTCAAAACCAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGTGTGCGGCCG 1625723 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || ||||| || ||||| ||||| | ||| || || || || | ||| || ||| Sbjct 1625722 TCCTCGAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATACCTTCTTTG 1625663 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| |||||| ||| || | | |||| |||| || |||| || || Sbjct 1625662 TCCTGAATTTTCGCCTTCACATTTTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATG 1625603 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||| || || || || || ||||| Sbjct 1625602 GTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45107 TCGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG 45166 || || ||||| | || | ||| | ||| |||||| ||| |||||||||||||| || Sbjct 1626025 TCTCCGCCTCTAAGTCGAAGTACAAGGTGAAGCGTGGACTCTTTCTGAATGTTGTAATCA 1625966 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 ||| ||| |||| || || ||||| |||||||| || |||| ||| || || ||| Sbjct 1625965 GAAAGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATTAACCTCTGCTGATCTGGA 1625906 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||| || ||||| |||||| ||| || | | |||| |||| Sbjct 1625905 GGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCAGACGCCTCA 1625846 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| || || ||||| || |||| || || || || || ||||| Sbjct 1625845 ACTTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| || || || |||| ||| || ||||||||||| || || Sbjct 1625110 CCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAG 1625051 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || || |||||||||||||| || ||||||| || || || || || Sbjct 1625050 AGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGG 1624991 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| |||||| || || | | | |||| |||| || Sbjct 1624990 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACT 1624931 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| |||||| || || |||||||| Sbjct 1624930 TCCAACGTGATGGTCTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 1624884 >seq8074 Length=2046595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| || ||||| ||| || || |||| ||||| ||||| |||||||| || Sbjct 637374 TTCTGGATATTGTAATCGGAAAGAGTACGTCCGTCCTCCAGCTGTTTGCCGGCGAAGATG 637315 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | |||||||| || || || | |||||||||||| || || ||| || | | Sbjct 637314 AGTCGCTGTTGATCCGGCGGAATTCCCTCCTTGTCCTGTATCTTCGCCTTGACATTCTCG 637255 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | | || |||| ||||| | ||| || ||||| ||||| || |||||||| ||| Sbjct 637254 ATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 637195 Query 45329 ATTTGCATGTTGCCT 45343 || |||||| || || Sbjct 637194 ATCTGCATGGTGGCT 637180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394700652413548