Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq6476 96.9 3e-15 seq34430 91.5 1e-13 >seq6476 Length=10381176 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || || || ||||| | ||||||||||| || ||| |||| || ||| | Sbjct 5657133 CATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTC 5657192 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| |||||| || |||| ||||| | |||||||| | || || || Sbjct 5657193 TGACACAATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCA 5657252 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||||| || | || ||||| || |||||||| || || | |||||||| Sbjct 5657253 ACAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGACGGCAGAACCCTTTCCGATTACAA 5657312 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || ||||| | || || || ||||| |||||| | |||||||| Sbjct 5657313 CATCCAAAAAGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 5657360 >seq34430 Length=319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || || || ||||| | ||||||||||| || ||| |||| || ||| | Sbjct 81 CATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTC 140 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | || || | || || | ||||||||| | || || || Sbjct 141 TGACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCA 200 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||||| || | ||| ||||| ||||| |||||| || |||| | ||||| | Sbjct 201 GCAGCGTTTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAA 260 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| | ||||| ||||| || | || | || ||||| Sbjct 261 CATCCAGAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGG 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417907430552960