Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8374 118 1e-21 seq34014 98.7 1e-15 seq6487 93.3 5e-14 seq7702 89.7 6e-13 >seq8374 Length=807232 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 33848 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || |||||| || || | ||||| |||||| || ||||| || ||||| ||||| || Sbjct 791820 AATATAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATT 791763 Query 33906 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCT 33965 ||||| ||||||||||| | || || || || | |||||| || |||| ||| | Sbjct 791762 TGAAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATT 791703 Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || || || ||| || || ||||| ||||| ||||| |||||| Sbjct 791702 AAATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAA 791643 Query 34026 TATTTTTCGTC 34036 ||||| ||||| Sbjct 791642 TATTTCTCGTC 791632 >seq34014 Length=448 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 63739 || || || |||||||| || || || || || || ||| |||||||| || ||| Sbjct 445 GTTGGCGAGGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 387 Query 63740 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||| || || || ||||| || || || || | ||| |||||||||||||| || || Sbjct 386 GTCGATGTCATTTTCGTGAATGCCAACGGCCACTCTCATCAACATGTGCTGAGGCCTCTC 327 Query 63800 AACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 || || ||| ||| |||||||||| ||| | | || | |||||||| |||| ||| Sbjct 326 GACTATCTTGCCGTTGATTTTCAACAGATAGCTTCTCTCGAGCGTTTTAAAGCCAATATA 267 Query 63860 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 || || ||||| || ||||| || || | |||| Sbjct 266 ATTATAATTGAAGTCCCGATCGTATATTATCGCAGAAT 229 >seq6487 Length=3923646 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 63739 || || ||||||||||| || || || || || || ||| |||||||| || ||| Sbjct 1176543 GTTGGCGAAGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 1176601 Query 63740 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||| || || || ||||| || | || || | ||| |||||||||||||||||||| Sbjct 1176602 GTCGATGTCATTTTCGTGAATCCCAATGGCCACTCTCATCAACATGTGCTGAGGTCTTTC 1176661 Query 63800 AACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 || || ||| ||| ||||||| || ||| | | || | |||||||| || | || Sbjct 1176662 GACTATCTTGCCGTTGATTTTCAGCAGATAGCTTCTCTCGAGCGTTTTAAAGCCGATGTA 1176721 Query 63860 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 || || ||||| || ||||| || || | |||| Sbjct 1176722 ATTATAATTGAAGTCCCGATCGTATATTATCGCAGAAT 1176759 >seq7702 Length=1018864 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 64008 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATG 64067 ||||| | || ||||| |||||||| || || |||||||| ||||| || |||| | Sbjct 550897 CTAAAAACCTTCTTTGTCTCCTTGTGCAGGTTAGATATGGCAATTCTAGCTGCTAAGGTC 550838 Query 64068 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 || |||||||||||||| | | ||| || || |||||||||||| | | |||||| Sbjct 550837 GCGTAATCCGGATGTTGATTGATCATAGTCGCCGCAGTTTCGGCTGCCACATTATCCAAT 550778 Query 64128 TCTACCGTTGTTACTCC 64144 || | || || ||||| Sbjct 550777 TCGATTGTCGTCACTCC 550761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629205196856640