Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8374 122 1e-22 seq34014 102 1e-16 seq6487 96.9 5e-15 seq7702 86.0 8e-12 seq34013 84.2 3e-11 >seq8374 Length=807232 Score = 122 bits (134), Expect = 1e-22 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 36424 AACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 36481 || ||| || ||||| | ||||| |||||| || ||||| || ||||| ||||| ||| Sbjct 791820 AATATAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATT 791763 Query 36482 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCT 36541 ||||| ||||||||||| | || || || || | ||||| || |||| ||| | Sbjct 791762 TGAAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATT 791703 Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 ||||||||||| || || |||||| || || ||||| ||||| ||||| |||||| Sbjct 791702 AAATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAA 791643 Query 36602 TATTTTTCGT 36611 ||||| |||| Sbjct 791642 TATTTCTCGT 791633 >seq34014 Length=448 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 66532 || || || |||||||| || || || || || || ||| |||||||| || ||| Sbjct 445 GTTGGCGAGGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 387 Query 66533 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 ||| || || || ||||| || || || || | ||| |||||||||||||| || || Sbjct 386 GTCGATGTCATTTTCGTGAATGCCAACGGCCACTCTCATCAACATGTGCTGAGGCCTCTC 327 Query 66593 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 66652 || |||||| ||| |||||||||| ||| | | || | |||||||| |||| ||| Sbjct 326 GACTATCTTGCCGTTGATTTTCAACAGATAGCTTCTCTCGAGCGTTTTAAAGCCAATATA 267 Query 66653 GTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || || ||||| || ||||| || || Sbjct 266 ATTATAATTGAAGTCCCGATCGTATATTAT 237 >seq6487 Length=3923646 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 66532 || || ||||||||||| || || || || || || ||| |||||||| || ||| Sbjct 1176543 GTTGGCGAAGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 1176601 Query 66533 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 ||| || || || ||||| || | || || | ||| |||||||||||||||||||| Sbjct 1176602 GTCGATGTCATTTTCGTGAATCCCAATGGCCACTCTCATCAACATGTGCTGAGGTCTTTC 1176661 Query 66593 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 66652 || |||||| ||| ||||||| || ||| | | || | |||||||| || | || Sbjct 1176662 GACTATCTTGCCGTTGATTTTCAGCAGATAGCTTCTCTCGAGCGTTTTAAAGCCGATGTA 1176721 Query 66653 GTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || || ||||| || ||||| || || Sbjct 1176722 ATTATAATTGAAGTCCCGATCGTATATTAT 1176751 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||||||||| || || || || |||||||||| |||| || ||| ||||| ||| Sbjct 1175989 GTATACAATTCTTTAAATTCATCGCCCCAAACATCAGCCAAGCCGGGAGATTCACAAGGA 1176048 Query 66030 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 |||||||| |||| ||| |||| | | ||| |||| |||||| ||||| || ||||| Sbjct 1176049 CACATCAAGCTCCACATCT-CGTCGTTGTACACACGTTCCATAAAAAGATCTGGTATCCA 1176107 Query 66089 AAGAGCTATA-AATAAATCTCTGGTTC 66114 || || || ||||| ||||||| || Sbjct 1176108 CAG-GCCGTAGAATAAGTCTCTGGCTC 1176133 >seq7702 Length=1018864 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 ||||| | || ||||| || ||||| || || |||| ||| |||||||| |||| | Sbjct 550897 CTAAAAACCTTCTTTGTCTCCTTGTGCAGGTTAGATATGGCAATTCTAGCTGCTAAGGTC 550838 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 || |||||||||||||| | | ||| || || |||||||||||| | | |||||| Sbjct 550837 GCGTAATCCGGATGTTGATTGATCATAGTCGCCGCAGTTTCGGCTGCCACATTATCCAAT 550778 Query 66921 TCTACCGTTGTTACTCC 66937 || | || || ||||| Sbjct 550777 TCGATTGTCGTCACTCC 550761 >seq34013 Length=456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||||||||| || || || || |||||||||| |||| || ||| ||||| ||| Sbjct 390 GTATACAATTCTTTAAATTCATCGCCCCAAACATCAGCCAAGCCGGGAGATTCACAAGGA 331 Query 66030 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 |||||||| |||| ||| |||| | | ||| |||| |||||| ||||| || ||||| Sbjct 330 CACATCAAGCTCCACATCT-CGTCGTTGTACACACGTTCCATAAAAAGATCTGGTATCCA 272 Query 66089 AAGAGCTATA-AATAAATCTCTGGTTC 66114 || || || ||||| ||||||| || Sbjct 271 CAG-GCCGTAGAATAAGTCTCTGGCTC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657532825677920