Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8374 109 7e-19 seq6487 86.0 8e-12 >seq8374 Length=807232 Score = 109 bits (120), Expect = 7e-19 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407 ||||| |||||| || ||||| || ||||| ||||| || ||||| ||||||||||| | Sbjct 791801 AAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATTTGAAAGCCGTAGAAACAAC 791744 Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTC 42467 || || || | | ||||| || |||| |||| ||||||||| || || || | Sbjct 791743 GTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATTAAATTTTCATTAACAATAC 791684 Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 ||||| || || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 791683 CGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAATATTTCTCGTC 791632 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| || ||| | || ||||| ||||||| |||||| ||| | Sbjct 791415 TACTTCTTCTATAGTCCAAAAGGAGGCTACAGCTTTTTTGTACATATCCCAGATGTCAGG 791356 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 ||| ||||| ||||| || ||||| | ||||||| Sbjct 791355 ATACTGAATAGGGAACATTACAAAGCGATTTGGA 791322 >seq6487 Length=3923646 Score = 86.0 bits (94), Expect = 8e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 || || ||||||||||| || || || |||| ||| |||||||| || ||| Sbjct 1176543 GTTGGCGAAGCGTGCGTGAAGTATCGCTCGGACAAATAATTATACGTCTCTATGGCTTTG 1176602 Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || || || || || || | || || | ||| ||||| |||||||||||||| Sbjct 1176603 TCGATGTCATTTTCGTGAATCCCAATGGCCACTCTCATCAACATGTGCTGAGGTCTTTCG 1176662 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 || |||||| || ||||||| || ||| | | || | |||||||| || | || Sbjct 1176663 ACTATCTTGCCGTTGATTTTCAGCAGATAGCTTCTCTCGAGCGTTTTAAAGCCGATGTAA 1176722 Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675 || || ||||| || ||||| || || | |||| ||| | ||| | ||| ||| Sbjct 1176723 TTATAATTGAAGTCCCGATCGTATATTATCGCAGAATCCAGTCTCTCCGCGTTTTTCTTA 1176782 Query 72676 ACTATAT 72682 | |||| Sbjct 1176783 ATAATAT 1176789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670486617798880