Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6476 150 1e-31 seq34431 113 3e-20 seq34430 95.1 9e-15 seq6559 91.5 1e-13 seq61987 82.4 6e-11 >seq6476 Length=10381176 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || || || |||||||| |||||||||||| || |||| | Sbjct 5657349 TCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 5657290 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | || ||||||||| | |||||||| ||||| || ||||||||||||||| Sbjct 5657289 GTCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTT 5657230 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| ||| || ||||||| || || ||| || || | ||| || Sbjct 5657229 GTCCTGGATTTTGGCCTTCACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGAT 5657170 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || |||||||| || || |||||||| Sbjct 5657169 GGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 5657134 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| | |||||| || || || || || ||||||||||| ||| |||| | || Sbjct 5656890 TAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTTCTGCCATC 5656831 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||| ||| |||||||| | |||||||||||||| || ||||| ||||||||||| Sbjct 5656830 CTCTAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTC 5656771 Query 15271 ACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 || || ||| || ||| | ||||| || || | ||| || || | ||| |||| Sbjct 5656770 CTGGATCTTAGCT-TTGACATTCTCTATAGTGTCAGAAGCTTCCACCTCGAGGGTGATGG 5656712 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || |||||||| || || |||||||| Sbjct 5656711 TTTTTCCAGTAAGAGTTTTCACGAAGATTTGCAT 5656678 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 5657115 AACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAAAGAGTCCTGCCATCTTC 5657056 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | |||| ||| || || || ||||| ||||||||||| Sbjct 5657055 GAGTTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 5656996 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||||| | || || || || ||| || || | ||| |||||||| Sbjct 5656995 GATCTTGGCTTTTACGTTCTCGATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 5656936 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| ||||| ||||||||| Sbjct 5656935 GCCAGTGAGAGTTTTCACAAAGATTTGCATA 5656905 >seq34431 Length=440 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || |||||||| ||||| || ||| ||| |||| | ||||| Sbjct 412 AACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCGGAAAGAGTTCTACCATCTTC 353 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | |||||||| ||||| || ||||| ||||||||||| Sbjct 352 GAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGGGGAATGCCTTCTTTGTCTTG 293 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||||| | || || || || ||| || || | || |||||||| Sbjct 292 GATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACTTCGAGAGTGATGGTTTT 233 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || |||||||| Sbjct 232 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 203 >seq34430 Length=319 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 291 AACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAAAGAGTCCTGCCATCTTC 232 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | |||||||| || || || ||||| ||||||||||| Sbjct 231 GAGTTGCTTGCCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTG 172 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||||| | || || || || ||| || || | ||| |||||||| Sbjct 171 GATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 112 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || |||||||| Sbjct 111 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 82 >seq6559 Length=1815223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||||||||| | ||||| ||||| || ||||| ||||| Sbjct 1625110 CCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAG 1625051 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | |||||| || || | ||||| | ||| || || || Sbjct 1625050 AGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGG 1624991 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||||| || ||| | || || || || || || Sbjct 1624990 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACT 1624931 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||||| ||| || || |||||||||||| Sbjct 1624930 TCCAACGTGATGGTCTTTCCTGTCAAAGTCTTGACGAAAATTTGCATA 1624883 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| | ||| |||||||| || || || |||||||| || || | | || Sbjct 1625782 CTCAAAACCAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGTGTGCGGCCG 1625723 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 || || | ||||| |||||| | ||||| | || || || || || ||||||||| Sbjct 1625722 TCCTCGAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATACCTTCTTTG 1625663 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| |||| || || || || || || || || ||| Sbjct 1625662 TCCTGAATTTTCGCCTTCACATTTTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATG 1625603 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||||| ||||| || ||||| |||||| Sbjct 1625602 GTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCATA 1625567 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| ||||| | ||||| |||||||| ||||||||||| Sbjct 1625338 CCACCACGAAGTCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAA 1625279 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || | ||||| || ||| | ||||| | || || || || Sbjct 1625278 AGCGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625219 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||||| || || | || || || || || || Sbjct 1625218 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAACC 1625159 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| ||||| | ||||| || |||||||||||| Sbjct 1625158 TCCAGTGTGATGGTTTTTCCTGTTAAGGTTTTAACGAAAATTTGCATA 1625111 >seq61987 Length=372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||||||||| | ||||| ||||| || ||||| ||||| Sbjct 62 CCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAG 121 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | |||||| || || | ||||| | ||| || || || Sbjct 122 AGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGG 181 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||||| || ||| | || || || || || || Sbjct 182 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCAGACGCCTCAACT 241 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||||| ||||| || ||||| |||||| Sbjct 242 TCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCATA 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361835839178508