Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6559 107 2e-18 seq61286 95.1 1e-14 >seq6559 Length=1815223 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||| || |||| |||| || || ||||| ||||| ||||| || | | Sbjct 1625794 CCTCCACGAAGCCTCAAAACCAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAC 1625735 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||| ||||||||||| || | || | |||||||||||| ||| Sbjct 1625734 AGTGTGCGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625675 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||||||| || || | ||| || || | ||| | Sbjct 1625674 ATACCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATCGTGTCAGACGCCTCAACT 1625615 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| || |||||||| ||||| ||||| Sbjct 1625614 TCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625568 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || || |||| |||||||| || || |||||||| |||||||| | | || | || Sbjct 1625326 CTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAAAGCGTGCGGCCG 1625267 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||||||||| || | || | |||||||||||| ||| | || || || Sbjct 1625266 TCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTA 1625207 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || |||||| ||| || | ||| || || | ||| || | || ||| Sbjct 1625206 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAACCTCCAGTGTGATG 1625147 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||| ||||| || ||||||||||| Sbjct 1625146 GTTTTTCCTGTTAAGGTTTTAACGAAAATTTGCAT 1625112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | || || || | |||| || || ||||| ||||| ||||| || | | Sbjct 1625566 CCTCCGCGAAGTCTCAAAACAAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAC 1625507 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||| ||||||||||| || | || | |||||||||||| ||| Sbjct 1625506 AGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625447 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| |||||| ||| || | ||| || || || ||| Sbjct 1625446 ATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGATTGTGTCCGAAGCCTCAACC 1625387 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||||||||| || | || ||||| ||||| ||||| Sbjct 1625386 TCCAGTGTGATGGTTTTACCCGTGAGCGTCTTGACGAAAATCTGCAT 1625340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| ||||| || ||||| |||||||| | | ||| | ||||||| ||||| Sbjct 1625999 GTGAAGCGTGGACTCTTTCTGAATGTTGTAATCAGAAAGTGTGCGGCCGTCCTCGAGCTG 1625940 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||| || | || | ||||||||||| || | || |||||||| |||||| Sbjct 1625939 TTTACCGGCGAAGATTAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTT 1625880 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | ||| || || | ||| ||| | || ||||| || ||||| Sbjct 1625879 CGCCTTCACGTTTTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGT 1625820 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || |||||||| ||||| ||||| Sbjct 1625819 CAAGGTTTTGACGAAAATCTGCAT 1625796 >seq61286 Length=444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || || |||| |||||||| || || || ||||| |||||||| | | || | || Sbjct 178 CTCAATACCAAATGCAACGTGGATTCTTTCTGAATGTTGTAATCAGAAAGCGTGCGGCCG 237 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||| ||||||||||| ||| | || | |||||||||||| ||| | || || || Sbjct 238 TCCTCGAGCTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTA 297 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || |||||| ||| || | ||| || || | ||| ||| | || ||| Sbjct 298 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATG 357 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || |||||||| ||||| ||||| Sbjct 358 GTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414179767884472