Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq34431 100 2e-16 seq34430 98.7 6e-16 seq6559 98.7 6e-16 seq24285 89.7 3e-13 seq6476 87.8 1e-12 >seq34431 Length=440 Score = 100 bits (110), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||| | || ||||||||||| || || || || || | ||||| Sbjct 417 CGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCGGAAA----GAGTTCT 362 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || || | |||||| ||| || || ||||| || || |||| ||| |||||||| Sbjct 361 ACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGGGGAATGCCTTC 302 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| |||||| | | ||| ||||| || || ||| || ||||| Sbjct 301 TTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACTTCGAGAGT 242 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || |||||||| ||||| |||||||| Sbjct 241 GATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 203 >seq34430 Length=319 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--T 33212 |||| |||||||| | || |||||||| || || || ||||| || | |||| | Sbjct 296 CGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAAA----GAGTCCT 241 Query 33213 GG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | || || | |||||| || ||| || ||||| ||||| || | ||| |||||||| Sbjct 240 GCCATCTTCGAGTTGCTTGCCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATGCCTTC 181 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| |||||| | | ||| ||||| || || ||| || || || Sbjct 180 TTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACTTCGAGGGT 121 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || |||||||| ||||| ||||||||| Sbjct 120 GATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATG 81 >seq6559 Length=1815223 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || || || || |||||||| || ||||| || | ||| || Sbjct 1624636 ACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCTGACAAGGTGCGCCCGTCCTCG 1624577 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| || || ||||| ||||| || | || ||||||||||| || | Sbjct 1624576 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGGATGCCTTCTTTATCCTGA 1624517 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| | ||| || | | ||||||||| | || || |||| ||| || || ||| Sbjct 1624516 ATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCGACCTCCAAAGTGATAGTCTTT 1624457 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||| ||||| || ||||| Sbjct 1624456 CCTGTCAAAGTTTTAACGAAGATCTGCAT 1624428 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| || | |||||||||||| || || || || || |||||||| ||||| Sbjct 1624883 ACCACCACGTAAACGGAGCACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGA 1624824 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | || || | || ||||| ||| || || | || ||||||| || Sbjct 1624823 AAGTGTGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCCGGTGG 1624764 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || ||| ||| || | | || ||||| | || ||| Sbjct 1624763 AATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTCTCGATTGTGTCCGAAGCTTCAAC 1624704 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || || ||||| || || ||||| ||||| || ||||| Sbjct 1624703 CTCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCAT 1624656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| ||||||||||| || || |||||||| || ||||||||||| | || | ||| Sbjct 1625324 CAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAAAGCGTGCGGCCGTC 1625265 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | || || || || || || | ||||| || | ||| || ||||| || || Sbjct 1625264 CTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATC 1625205 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || | | |||||||| | | ||| ||||| || || || Sbjct 1625204 CTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAACCTCCAGTGTGATGGT 1625145 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || | ||||| |||||||||||||| Sbjct 1625144 TTTTCCTGTTAAGGTTTTAACGAAAATTTGCAT 1625112 >seq24285 Length=372 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || || || || |||||||| || |||| | | || || Sbjct 295 ACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAGGGTACGCCCATCCTCG 236 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| || || ||||| ||||| || | || ||||||||||| || | Sbjct 235 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGGATGCCTTCTTTATCCTGA 176 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| | ||| || | | ||||||||| | || ||| |||| ||| || || ||| Sbjct 175 ATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCAACCTCCAAAGTGATGGTCTTT 116 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||| || ||||| Sbjct 115 CCTGTCAGGGTTTTAACGAAGATCTGCAT 87 >seq6476 Length=10381176 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--T 33212 |||| |||||||| | || |||||||| || || || ||||| || | |||| | Sbjct 5657120 CGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAAA----GAGTCCT 5657065 Query 33213 GG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | || || | |||||| || ||| || | ||| ||||| |||| ||| |||||||| Sbjct 5657064 GCCATCTTCGAGTTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGGGGAATGCCTTC 5657005 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| |||||| | | || ||||| || || ||| || || || Sbjct 5657004 TTTGTCTTGGATCTTGGCTTTTACGTTCTCGATTGTGTCAGAGGCTTCAACTTCGAGGGT 5656945 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || |||||||| || || |||||||| Sbjct 5656944 GATGGTTTTGCCAGTGAGAGTTTTCACAAAGATTTGCAT 5656906 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG-GTCATC 33219 |||| ||| | || || || || || || ||||||||||| | ||||| | |||| Sbjct 5656886 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGAAA----GAGTTCTGCCATC 5656831 Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 | | |||||| ||| ||| || |||||||| || || | || || |||||||| || Sbjct 5656830 CTCTAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTC 5656771 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || | | || ||||| | || || || || || || || Sbjct 5656770 CTGGATCTTAGCTTTGACATTCTCTATAGTGTCAGAAGCTTCCACCTCGAGGGTGATGGT 5656711 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||| ||||||||||| ||||| ||||||||| Sbjct 5656710 TTTTCCAGTAAGAGTTTTCACGAAGATTTGCATG 5656677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318475385685624