Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6559 159 8e-34 seq61987 147 5e-30 seq34431 138 3e-27 seq24285 138 3e-27 seq6476 129 1e-24 seq61286 123 6e-23 seq8374 96.9 8e-15 seq7367 95.1 3e-14 >seq6559 Length=1815223 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || |||||||| ||||||||||| |||||||| || || | ||| || Sbjct 1624867 AGCACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCC 1624808 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| ||||| || | |||||||| || || || || |||||||| ||| Sbjct 1624807 TCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCCGGTGGAATGCCTTCTTTGTCC 1624748 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| |||||||| ||||| || | || || || ||| ||||| | || || ||| Sbjct 1624747 TGAATTTTTGCTTTGACATTCTCGATTGTGTCCGAAGCTTCAACCTCCAAAGTGATGGTC 1624688 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| || || ||||||||| Sbjct 1624687 TTTCCTGTCAGGGTTTTAACGAAGATCTGCATT 1624655 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | || ||||| ||||| ||||| ||||| Sbjct 1624657 ATTCCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCT 1624598 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||||| || || || |||||||| || || | | ||| |||||||| Sbjct 1624597 GACAAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGC 1624538 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||||||||| ||||| ||||| || | || || || ||| Sbjct 1624537 GGGATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCG 1624478 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | || |||||||| || || | ||||| || || ||||||||| Sbjct 1624477 ACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTTTTAACGAAGATCTGCATT 1624427 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | || ||||| ||||| ||||| ||||| Sbjct 1624429 ATTCCACCGCGCAGGCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCG 1624370 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||| || || || |||||||| || || | | ||| |||||||| Sbjct 1624369 GACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGC 1624310 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || |||||||||||||| || || || || | ||| ||| || || Sbjct 1624309 GGGATTCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTGTCGGAAGCCTCA 1624250 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| | || || || ||||||||||| Sbjct 1624249 ACTTCAAGAGTTATGGTCTTCCCAGTTAACGTCTTCACGAATATCTGCAT 1624200 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| ||||| |||||||||||||| ||||| ||||| || || | ||| || || Sbjct 1625092 ACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAGAGCGTGCGACCATCCTCG 1625033 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| ||||| || | ||| || ||||| || || |||||||| || || ||| Sbjct 1625032 AGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGA 1624973 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| ||||| || | || || | || || || | || || ||||| Sbjct 1624972 ATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTT 1624913 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || || ||||| Sbjct 1624912 CCTGTCAAAGTCTTGACGAAAATTTGCAT 1624884 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | |||||| || || | || || ||||||||||| || || ||||| Sbjct 1626023 TCCGCCTCTAAGTCGAAGTACAAGGTGAAGCGTGGACTCTTTCTGAATGTTGTAATCAGA 1625964 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | ||||| || || ||||| || || || |||| |||||| ||||| ||||| Sbjct 1625963 AAGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATTAACCTCTGCTGATCTGGAGG 1625904 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || |||||||| || ||||| || || || || ||||| | || || | || || Sbjct 1625903 AATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCAGACGCCTCAAC 1625844 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| || || | ||||| || || |||||||| Sbjct 1625843 TTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625796 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || || |||||||| ||||| || || ||||| || || | ||||| || || || Sbjct 1625315 ATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAAAGCGTGCGGCCGTCCTCGAGCTG 1625256 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| || || || || | ||||| ||||| || || |||||||| ||||||||||| || Sbjct 1625255 TTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATTTT 1625196 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || || || | || || | || ||||| ||||| || || || || || Sbjct 1625195 GGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAACCTCCAGTGTGATGGTTTTTCCTGT 1625136 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || || ||||| Sbjct 1625135 TAAGGTTTTAACGAAAATTTGCAT 1625112 >seq61987 Length=372 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| ||||| |||||||||||||| ||||| ||||| || || | ||| || || Sbjct 80 ACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAGAGCGTGCGACCATCCTCG 139 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| ||||| || | ||| || ||||| || || |||||||| ||||||||| Sbjct 140 AGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGA 199 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| ||||| || | || || | || || || | || || ||||| Sbjct 200 ATTTTGGCTTTGACATTCTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATGGTCTTT 259 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| || || |||||||| Sbjct 260 CCTGTCAAGGTTTTGACGAAAATCTGCAT 288 >seq34431 Length=440 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || | ||| | ||||| ||||| || || |||||||| Sbjct 432 ATGCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCG 373 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| ||||| ||||| || ||||| ||||| | | ||||||||| || Sbjct 372 GAAAGAGTTCTACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGG 313 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| |||||||| || || | || || | ||| Sbjct 312 GGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCA 253 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || || || || ||||| || || || |||||| Sbjct 252 ACTTCGAGAGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATT 202 >seq24285 Length=372 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | || ||||| ||||| ||||| ||||| Sbjct 316 ATTCCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCG 257 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || |||||||| || || | | ||| |||||||| Sbjct 256 GACAGGGTACGCCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGC 197 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||||||||| ||||| ||||| || | || || || ||| Sbjct 196 GGGATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCA 137 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | || || ||||| || || || ||||| || || ||||||||| Sbjct 136 ACCTCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCATT 86 >seq6476 Length=10381176 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | |||||||||||| || || || || || || || ||||| |||||||| Sbjct 5657342 ACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCGTCTTCC 5657283 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| ||||| | | ||||||||| || || ||||||||||| ||||| Sbjct 5657282 AGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGG 5657223 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||||| || || | ||| || || || || || || || Sbjct 5657222 ATTTTGGCCTTCACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTG 5657163 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || ||||| Sbjct 5657162 CCGGTGAGAGTTTTCACGAAGATTTGCAT 5657134 >seq61286 Length=444 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || | ||| | ||| || || |||||||||||||| || || ||||| || || | Sbjct 175 AGTCTCAATACCAAATGCAACGTGGATTCTTTCTGAATGTTGTAATCAGAAAGCGTGCGG 234 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || ||||| || ||||| || | ||||| ||||| || || |||||||| Sbjct 235 CCGTCCTCGAGCTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCC 294 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||||||||| || ||||| || || || | || || | || || || | || Sbjct 295 TTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGACGCCTCAACTTCCAACGTG 354 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || | ||||| || || |||||||| Sbjct 355 ATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 392 >seq8374 Length=807232 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | | || ||||| || | | ||| ||||| ||||| |||||| || Sbjct 791644 TTTATCTCTCATGTCTTGGCATTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAATTTA 791703 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 | || | ||| |||| || || | || ||||||| | ||||| ||||| || || Sbjct 791704 ATTGAAAGATTCAGTCAGGAAGTGAAAATCACTGAAGCACGTTGTTTCTACGGCTTTCAA 791763 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || ||||||||||| ||||| |||||||| | | | || || |||||||| Sbjct 791764 ATTGCCATAGAAAATATCCATTCTGAGATGTATTCTTTGCTCATTGAAACTTATAT 791819 >seq7367 Length=54923 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||||||||| || ||||| || || ||||| || || ||||| | ||| Sbjct 20334 TGTAAAGTGGATTCTTTCTGGATGTTATAATCCGACAGAGTCCTGCCATCTTCCAATTGC 20393 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || ||||||||||| | || ||||||||||| || |||||| Sbjct 20394 TTGCCAGCAAAAATCAATCTTTGTTGATCAGGCGGAATTCCT 20435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150250848709904