Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6559 123 2e-23 seq8074 104 2e-17 seq6476 102 7e-17 seq61286 86.0 5e-12 >seq6559 Length=1815223 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | || || || | ||| || ||| ||||| ||||||||||| |||| Sbjct 1625567 ACCTCCGCGAAGTCTCAAAACAAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 1625508 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || ||||||| ||||| |||||| || | || || | ||||||||| || Sbjct 1625507 CAGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 1625448 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||||| |||||| |||| | | || || || | || ||| Sbjct 1625447 GATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGATTGTGTCCGAAGCCTCAAC 1625388 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| ||||||||||| ||||| || || || ||||||||||| Sbjct 1625387 CTCCAGTGTGATGGTTTTACCCGTGAGCGTCTTGACGAAAATCTGCAT 1625340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| || || | ||| || ||| ||||| ||||||||||| |||| Sbjct 1625795 ACCTCCACGAAGCCTCAAAACCAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 1625736 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 1625735 CAGTGTGCGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGG 1625676 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||| |||||| ||||||| ||| | | | || || || | | ||| Sbjct 1625675 GATACCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATCGTGTCAGACGCCTCAAC 1625616 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || | ||||| || ||||||||||| Sbjct 1625615 TTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | || ||||| || ||| ||||| || || ||||| || | | Sbjct 1624426 CCACCGCGCAGGCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 1624367 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| || || | || |||||||||||||| ||| Sbjct 1624366 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGG 1624307 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||| || ||| | | | ||||| |||| || ||| Sbjct 1624306 ATTCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTGTCGGAAGCCTCAACT 1624247 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | |||||||| || || || | || ||||| || |||||||| ||| Sbjct 1624246 TCAAGAGTTATGGTCTTCCCAGTTAACGTCTTCACGAATATCTGCATGGTG 1624196 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || || || ||||| | ||| || ||||||||||||||||||| Sbjct 1625339 ACCACCACGAAGTCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAG- 1625281 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || ||||||| ||||| |||||| || | || || | ||||||||| | Sbjct 1625280 AAAGCGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 1625221 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| |||||| |||| | | || || || | | ||| Sbjct 1625220 GGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAA 1625161 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| |||||||| || || | ||||| || ||||| ||||| Sbjct 1625160 CCTCCAGTGTGATGGTTTTTCCTGTTAAGGTTTTAACGAAAATTTGCAT 1625112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| ||| || |||||||||||||||| || ||| || ||||||| ||||| Sbjct 1625998 TGAAGCGTGGACTCTTTCTGAATGTTGTAATCAG-AAAGTGTGCGGCCGTCCTCGAGCTG 1625940 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | ||||| | ||||||||| || | || ||| ||||| |||||| Sbjct 1625939 TTTACCGGCGAAGATTAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTT 1625880 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | || || || | | ||| || | || ||||| || || || Sbjct 1625879 CGCCTTCACGTTTTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGT 1625820 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || ||||||||||| Sbjct 1625819 CAAGGTTTTGACGAAAATCTGCAT 1625796 >seq8074 Length=2046595 Score = 104 bits (114), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 48529 TGTGCTCTCCTTT-TGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTA 48586 ||| | | ||||| || || |||||||| | || || || ||||||||||||| || Sbjct 637385 TGTCCGCACCTTTCTGGATATTGTAATCGGA-AAGAGTACGTCCGTCCTCCAGCTGTTTG 637327 Query 48587 CCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGC 48646 ||| || | || | ||||| |||||| ||| | | ||||||||| || ||| | Sbjct 637326 CCGGCGAAGATGAGTCGCTGTTGATCCGGCGGAATTCCCTCCTTGTCCTGTATCTTCGCC 637267 Query 48647 TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGA 48706 |||| | | | |||||||||| | ||| ||||| || ||||| ||||| ||||| Sbjct 637266 TTGACATTCTCGATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTCTTACCCGTGAGG 637207 Query 48707 GTTTTCACAAAAATCTGCATCGTGTCTT 48734 || ||||| || |||||||| ||| ||| Sbjct 637206 GTCTTCACGAAGATCTGCATGGTGGCTT 637179 >seq6476 Length=10381176 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | ||| ||||| || ||||| || ||||| ||||||||||| | Sbjct 5657360 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCGGAA 5657301 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||| ||||||||||| || || |||| |||||||| |||||| || Sbjct 5657300 AGGGTTCTGCCGTCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGTGGA 5657241 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| |||||| ||||| ||| | |||| || || | || || | | Sbjct 5657240 ATTCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATTGTGTCAG-AGGCTTCAAC 5657182 Query 48680 -TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| ||||||||||||||||| || || ||||| Sbjct 5657181 TTCGAGGGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 5657134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | || || | |||||| || ||||| || ||||||||||||| Sbjct 5656905 ACCTCCGCGAAGACGTAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGA 5656846 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | ||||| || ||||| || | | || ||||| || ||||| || Sbjct 5656845 AAGAGTTCTGCCATCCTCTAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 5656786 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||| |||||| || || |||| | | |||| || || | || ||| Sbjct 5656785 AATACCTTCTTTGTCCTGGATCTTAGCTTTGACATTCTCTATAGTGTCAGAAGCTTCCAC 5656726 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| || || ||||||||||| || || ||||| Sbjct 5656725 CTCGAGGGTGATGGTTTTTCCAGTAAGAGTTTTCACGAAGATTTGCAT 5656678 >seq61286 Length=444 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 ||||||| ||||| |||||| || | || || | ||||||||| || | || ||| | Sbjct 8 CGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATACCTTCTT 67 Query 48630 TGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTA 48689 ||||| |||||| |||| | | || || || | || ||| ||| | ||| | Sbjct 68 TGTCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGA 127 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||| ||||| || || || ||||||||||| Sbjct 128 TGGTTTTACCCGTGAGCGTCTTGACGAAAATCTGCAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420851836485788