Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6476 125 4e-24 seq7888 122 5e-23 seq6483 120 2e-22 seq6466 120 2e-22 seq6497 116 2e-21 seq56262 113 2e-20 seq6556 111 8e-20 >seq6476 Length=10381176 Score = 125 bits (138), Expect = 4e-24 Identities = 89/100 (89%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||| ||||||| || ||||||||||| |||||||||| |||||||||||||||| Sbjct 7401040 AATTAGGAAAAAATATAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 7401099 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 ||||||||||||| |||||||||||||||||||| ||||| Sbjct 7401100 AGCACGACGCTCTAACCAACTGAGCTAATGGGCCAGTCGA 7401139 >seq7888 Length=350141 Score = 122 bits (134), Expect = 5e-23 Identities = 80/88 (91%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || ||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 192384 ATAAAAAA--AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 192441 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 192442 ACGCTCTAACCAACTGAGCTAATGGGCC 192469 >seq6483 Length=1795271 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| | ||||| ||| |||||||||| |||||||||| ||||||||||||||||| Sbjct 224881 AATTGAAGAAAAA--AAAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 224938 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 224939 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 224972 >seq6466 Length=4936246 Score = 120 bits (132), Expect = 2e-22 Identities = 82/93 (88%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 490095 AATTGATAAAAAA----AATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 490150 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 490151 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 490183 >seq6497 Length=3469857 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1327619 AAAAAGTAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1327560 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1327559 GCTCTAACCAACTGAGCTAATGGGCC 1327534 >seq56262 Length=325 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 198 AAAAAGTAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 139 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 138 GCTCTAACCAACTGAGCTAATAGGCC 113 >seq6556 Length=3642341 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 2683611 AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 2683552 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2683551 CAACTGAGCTAATAGGCC 2683534 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261243295555888