Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6476 190 3e-44 seq6580 141 1e-29 >seq6476 Length=10381176 Score = 190 bits (210), Expect = 3e-44 Identities = 186/240 (78%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | |||||| ||||||||||| || ||||||||||| |||||| Sbjct 4642654 GCGAAGCGTCATAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCTATC 4642595 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| || ||||||||| | || || ||| |||| ||||| | Sbjct 4642594 CGTCGTCTGGCGCGACGTGGCGGTGTCAAGCGTATTTCCGGCTTGATCTACGAAGAAACA 4642535 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| |||| ||| ||| |||||| | |||||| | ||| ||||| Sbjct 4642534 CGTGGTGTGTTGAAAGTCTTTCTCGAGAACGTTATTCGCGATGCTGTAACCTACACCGAA 4642475 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| || || ||||||| |||| || || |||| ||||||||| Sbjct 4642474 CATGCGAAAAGGAAGACCGTGACTGCCATGGACGTCGTGTACGCCCTGAAGCGTCAAGGC 4642415 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||||| ||||||||||| || || |||||||| || || Sbjct 4541505 GCGAAGAGACATCGTAAAGTACTTCGCGATAACATCCAGGGTATTACCAAGCCGGCCATT 4541446 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| |||||||||||| |||| ||||| | || || || | Sbjct 4541445 CGTCGTCTAGCACGTCGTGGCGGAGTCAAGCGTATCTCCGGATTAATTTACGAGGAAACG 4541386 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| | | |||||||| ||| || || ||| |||||| Sbjct 4541385 CGTGGTGTACTGAAGGTGTTCCTAGAAAACGTTATCCGTGACGCGGTCACCTACACCGAG 4541326 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| || || ||||||| ||||||| || |||| || ||||| Sbjct 4541325 CACGCGAAAAGAAAGACCGTGACTGCCATGGACGTCGTCTACGCCCTGAAGCGCCAAGG 4541267 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||||| ||||||||||| || || |||||||| || || Sbjct 7005798 GCGAAGAGACATCGTAAAGTACTTCGCGATAACATCCAGGGTATTACCAAGCCGGCCATT 7005739 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| |||||||||||| |||| ||||| | || || || | Sbjct 7005738 CGTCGTCTAGCACGTCGTGGCGGAGTCAAGCGTATCTCCGGATTAATTTACGAGGAAACG 7005679 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| | | |||||||| ||| || || ||| |||||| Sbjct 7005678 CGTGGTGTACTGAAGGTGTTCCTAGAAAACGTTATCCGTGACGCGGTCACCTACACCGAG 7005619 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| || || ||||||| ||||||| || |||| || ||||| Sbjct 7005618 CACGCGAAAAGAAAGACCGTGACTGCCATGGACGTCGTCTACGCCCTGAAGCGCCAAGG 7005560 >seq6580 Length=946877 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| ||||||||||| ||||| ||||| |||| | ||||| || Sbjct 896891 CGTGATAACATCCAAGGCATCACCAAGCCGGCTATTCGTCGATTGGCCAGACGTGGCGGT 896950 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | ||||| ||| | || || |||| | | ||| |||| |||| || Sbjct 896951 GTCAAGCGTATTTCTGGCTTGATATACGAGGAGACCAGAGGTGTCCTGAAAGTCTTTCTG 897010 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||| || | |||||| | ||| ||||||||||| ||| | ||||| || || Sbjct 897011 GAAAACGTCATTCGCGATGCTGTAACCTACACCGAGCACGCCAAAAGGAAGACCGTAACA 897070 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | |||||||| ||||||| ||||| | | | || || ||||| || Sbjct 897071 GCTATGGACGTGGTCTATGCTCTGAAACGCCAAGGAAGAACCCTATACGGCTTTGGTGGT 897130 Query 16697 TAA 16699 ||| Sbjct 897131 TAA 897133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79004077887084