Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq26154 80.6 3e-11 seq19248 80.6 3e-11 seq18878 80.6 3e-11 >seq26154 Length=605 Score = 80.6 bits (88), Expect = 3e-11 Identities = 131/184 (71%), Gaps = 5/184 (3%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 ||||||||||||| ||||| |||||||| || |||||| | | | || ||| Sbjct 337 AATAGTATATTACGTCCCAAGGCCAGAAAGTTGGAT-TTCCTGGCGTATGTGATATGATG 395 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 4870 ||||||||||||||||| |||||| ||| | ||||||| ||| || || |||| Sbjct 396 GCCGAGGCGAAGCCGAGGCCATCATATCACATATGTCAGGGCATCCAACATTATGGCCAT 455 Query 4871 GTAGTGTATACTAGTTTTCTT-ACTATGCGGTCGAAAGTACGTTAAAAATTGCGTTGaaa 4929 | |||||||| ||||||| | | | ||||||||| ||||| | | || ||| Sbjct 456 GGGTCGTATACTATTTTTCTTGATCCTCTTGCCGAAAGTACATTAAATAAT--ATTAAAA 513 Query 4930 aaaa 4933 |||| Sbjct 514 AAAA 517 >seq19248 Length=480 Score = 80.6 bits (88), Expect = 3e-11 Identities = 131/184 (71%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 ||||||||||||| ||||| |||||||| || |||||| | || | || ||| Sbjct 297 AATAGTATATTACGTCCCAAGGCCAGAAAGTTGGAT-TTCCTGGCGTACGTGATATGATG 239 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 4870 ||||||||||||||||| |||||| ||| | ||||||| ||| || || || | Sbjct 238 GCCGAGGCGAAGCCGAGGCCATCATATCACATATGTCAGGGCATCCAACATTATGGCCGT 179 Query 4871 GTAGTGTATACTAGTTTTCTT-ACTATGCGGTCGAAAGTACGTTAAAAATTGCGTTGaaa 4929 | |||||||| ||||||| | | | ||||||||| ||||| | | || ||| Sbjct 178 GGGTCGTATACTATTTTTCTTGATCCTCTTGCCGAAAGTACATTAAATAAT--ATTAAAA 121 Query 4930 aaaa 4933 |||| Sbjct 120 AAAA 117 >seq18878 Length=526 Score = 80.6 bits (88), Expect = 3e-11 Identities = 131/184 (71%), Gaps = 5/184 (3%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 ||||||||||||| ||||| |||||||| || |||||| | | | || ||| Sbjct 1 AATAGTATATTACGTCCCAAGGCCAGAAAGTTGGAT-TTCCTGGCGTATGTGATATGATG 59 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 4870 ||||||||||||||||| |||||| ||| | ||||||| ||| || || || | Sbjct 60 GCCGAGGCGAAGCCGAGGCCATCATATCACATATGTCAGGGCATCCAACATTATGGCCGT 119 Query 4871 GTAGTGTATACTAGTTTTCTT-ACTATGCGGTCGAAAGTACGTTAAAAATTGCGTTGaaa 4929 | | |||||||| ||||||| | | | ||||||||| ||||| | | || ||| Sbjct 120 GGATCGTATACTATTTTTCTTGATCCTCTTGCCGAAAGTACATTAAATAAT--ATTAAAA 177 Query 4930 aaaa 4933 |||| Sbjct 178 AAAA 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55757804959360