Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8374 114 2e-20 seq34014 102 1e-16 seq6487 98.7 1e-15 seq7702 86.0 8e-12 >seq8374 Length=807232 Score = 114 bits (126), Expect = 2e-20 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 33570 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 || |||||| || || | ||||| |||||| || ||||| || ||||| ||||| || Sbjct 791820 AATATAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATT 791763 Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 ||||| ||||||||||| | || || || || | ||||| || |||| ||| Sbjct 791762 TGAAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATT 791703 Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747 ||||||||||| || || |||||| || || ||||| ||||| ||||| |||||| Sbjct 791702 AAATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAA 791643 Query 33748 TATTTTTCGTC 33758 ||||| ||||| Sbjct 791642 TATTTCTCGTC 791632 >seq34014 Length=448 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 63630 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 63688 || || || |||||||| || || || || || || ||| |||||||| || ||| Sbjct 445 GTTGGCGAGGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 387 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 ||| || || || ||||| || || || || | ||| |||||||||||||| || || Sbjct 386 GTCGATGTCATTTTCGTGAATGCCAACGGCCACTCTCATCAACATGTGCTGAGGCCTCTC 327 Query 63749 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 || |||||| ||| |||||||||| ||| | | || | |||||||| |||| ||| Sbjct 326 GACTATCTTGCCGTTGATTTTCAACAGATAGCTTCTCTCGAGCGTTTTAAAGCCAATATA 267 Query 63809 GTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 || || ||||| || ||||| || || Sbjct 266 ATTATAATTGAAGTCCCGATCGTATATTAT 237 >seq6487 Length=3923646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 63630 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 63688 || || ||||||||||| || || || || || || ||| |||||||| || ||| Sbjct 1176543 GTTGGCGAAGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 1176601 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 ||| || || || ||||| || | || || | ||| |||||||||||||||||||| Sbjct 1176602 GTCGATGTCATTTTCGTGAATCCCAATGGCCACTCTCATCAACATGTGCTGAGGTCTTTC 1176661 Query 63749 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 || |||||| ||| ||||||| || ||| | | || | |||||||| || | || Sbjct 1176662 GACTATCTTGCCGTTGATTTTCAGCAGATAGCTTCTCTCGAGCGTTTTAAAGCCGATGTA 1176721 Query 63809 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTT 63868 || || ||||| || ||||| || || | || | ||| | ||| | ||| || Sbjct 1176722 ATTATAATTGAAGTCCCGATCGTATATTATCGCAGAATCCAGTCTCTCCGCGTTTTTCTT 1176781 Query 63869 AACTATAT 63876 || |||| Sbjct 1176782 AATAATAT 1176789 >seq7702 Length=1018864 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 ||||| | || ||||| |||||||| || || |||| ||| ||||| || |||| | Sbjct 550897 CTAAAAACCTTCTTTGTCTCCTTGTGCAGGTTAGATATGGCAATTCTAGCTGCTAAGGTC 550838 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 || |||||||||||||| | | ||| || || |||||||||||| | | |||||| Sbjct 550837 GCGTAATCCGGATGTTGATTGATCATAGTCGCCGCAGTTTCGGCTGCCACATTATCCAAT 550778 Query 64077 TCTACCGTTGTTACTCC 64093 || | || || ||||| Sbjct 550777 TCGATTGTCGTCACTCC 550761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622341477290080