Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6476 116 3e-21 seq34430 113 4e-20 seq34431 105 6e-18 seq7367 98.7 8e-16 seq61987 89.7 4e-13 seq6559 84.2 2e-11 >seq6476 Length=10381176 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| || |||||||| ||| ||||| || || Sbjct 5656906 ATGCAAATCTTTGTGAAAACTCTCACTGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 5656965 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | |||||| || || || ||||||||| | ||| |||||| Sbjct 5656966 GACACAATCGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGGATCAG 5657025 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || |||| ||| ||||| ||| | ||||||| || || | | ||||||||| Sbjct 5657026 CAGCGTCTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAAC 5657085 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||||||||| | ||| |||| || | | |||||||| Sbjct 5657086 ATCCAGAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGG 5657132 >seq34430 Length=319 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| ||||| || |||||||| ||| ||||| || || Sbjct 82 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 141 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| || || || ||||||||| | ||| |||||| Sbjct 142 GACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 201 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| ||| ||||| ||| | ||||||| || || | | ||||||||| Sbjct 202 CAGCGTTTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAAC 261 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||||||||| | ||| |||| || | | |||||||| Sbjct 262 ATCCAGAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGG 308 >seq34431 Length=440 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || || ||||| ||||| || |||||||| || ||||| || || Sbjct 202 AATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACTCTCGAAGTTGAAGCCTC 261 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | |||||| || || || ||||||||| | ||| ||||| Sbjct 262 TGACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGGATCA 321 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || | | |||| || ||||| ||| | ||||||| | ||| | |||| ||||| Sbjct 322 ACAGCGTTTGATTTTCGCTGGCAAGCAACTCGAAGATGGTAGAACTCTTTCCGACTATAA 381 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| |||||||||||||| | ||| |||| || | | |||||||| Sbjct 382 CATCCAAAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGG 429 >seq7367 Length=54923 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| |||||| | |||| ||| ||||| ||||| ||||||| || || || | || Sbjct 20423 TGATCAACAAAGATTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGGACTCTGTCGGA 20364 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| || ||||| || ||| |||| |||||||| | |||||||| || Sbjct 20363 TTATAACATCCAGAAAGAATCCACTTTACACTTGGTGTTGCGCTTGCGAGGCGG 20310 >seq61987 Length=372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| | || ||||| ||||| || | ||| ||| | Sbjct 288 ATGCAGATTTTCGTCAAAACCTTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCT 229 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| |||||| ||||| ||||| ||||| ||||| Sbjct 228 GACAC-GATCGAGAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCCCCAGATCA 170 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || |||||| | || |||| || | | |||||||| Sbjct 169 GCAAAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGTCGCACGCTCTCTGATTATAA 110 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| ||||| || || | ||| | || |||||| | || || || Sbjct 109 CATTCAGAAAGAATCCACATTGCATTTAGTTTTGAGACTTCGCGGTGG 62 >seq6559 Length=1815223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || ||||| ||||| || | ||| ||| | Sbjct 1624884 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 1624943 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| |||||| || || ||||| ||||| ||||| Sbjct 1624944 GACAC-GATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCA 1625002 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || |||||| | || |||| || | | |||||||| Sbjct 1625003 GCAAAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGTCGCACGCTCTCTGATTATAA 1625062 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| ||||| || || | ||| | || |||||| | || || || Sbjct 1625063 CATTCAGAAAGAATCCACATTGCATTTAGTTTTGAGACTTCGCGGTGG 1625110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | || ||||||||||| || | || ||| | Sbjct 1625112 ATGCAAATTTTCGTTAAAACCTTAACAGGAAAAACCATCACACTGGAGGTTGAGGCATCT 1625171 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || ||| |||||| ||||| ||||| ||||| ||||| Sbjct 1625172 GACAC-GATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCCCCAGATCA 1625230 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | || || ||||| | || || | | || | | ||||| || Sbjct 1625231 GCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGACGGCCGCACGCTTTCTGATTACAA 1625290 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||| || || | ||| |||| |||||| | || || || Sbjct 1625291 CATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGACTTCGTGGTGG 1625338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424940756342560