Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8374 118 1e-21 seq34014 96.9 4e-15 seq6487 93.3 5e-14 >seq8374 Length=807232 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 32927 AACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 32984 || ||| || ||||| | ||||| |||||| || ||||| || ||||| ||||| ||| Sbjct 791820 AATATAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATT 791763 Query 32985 TGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCT 33044 ||||| |||||||| || | || || || || | ||||| || |||| ||| | Sbjct 791762 TGAAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATT 791703 Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 ||||||||||| || || |||||| || || ||||| ||||| ||||| |||||| Sbjct 791702 AAATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAA 791643 Query 33105 TATTTTTCGTC 33115 ||||| ||||| Sbjct 791642 TATTTCTCGTC 791632 >seq34014 Length=448 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 63523 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63582 ||| |||||||| || ||| ||| || || || ||||| || || || || | ||| Sbjct 407 ATTATACGTCTCTATGGCTTTGTCGATGTCATTTTCGTGAATGCCAACGGCCACTCTCAT 348 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 |||||||||||||| || || || |||||| ||| |||||||||| ||| | | || Sbjct 347 CAACATGTGCTGAGGCCTCTCGACTATCTTGCCGTTGATTTTCAACAGATAGCTTCTCTC 288 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | |||||||| |||| ||| || || ||||| || ||||| || || Sbjct 287 GAGCGTTTTAAAGCCAATATAATTATAATTGAAGTCCCGATCGTATATTAT 237 >seq6487 Length=3923646 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGA 63543 || || |||||||| || || || || || || || ||| |||||||| || ||| Sbjct 1176543 GTTGGCGAAGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 1176601 Query 63544 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 ||| || || || ||||| || | || || | ||| |||||||||||||||||||| Sbjct 1176602 GTCGATGTCATTTTCGTGAATCCCAATGGCCACTCTCATCAACATGTGCTGAGGTCTTTC 1176661 Query 63604 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663 || |||||| ||| ||||||| || ||| | | || | |||||||| || | || Sbjct 1176662 GACTATCTTGCCGTTGATTTTCAGCAGATAGCTTCTCTCGAGCGTTTTAAAGCCGATGTA 1176721 Query 63664 GTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || || ||||| || ||||| || || Sbjct 1176722 ATTATAATTGAAGTCCCGATCGTATATTAT 1176751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633015887924800