Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8374 141 1e-28 seq27024 120 3e-22 seq6511 120 3e-22 seq6532 113 5e-20 >seq8374 Length=807232 Score = 141 bits (156), Expect = 1e-28 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || ||||||||| |||||||||| ||| || || |||||||| Sbjct 791819 ATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGGATATTTTCTATGGCAATTTGA 791760 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || ||||||||||| | ||||| ||||| | |||||| ||| ||||| || | | | Sbjct 791759 AAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATTAAA 791700 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || ||||| || || || || ||||| ||||| | ||| ||||||| | Sbjct 791699 TTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAATAT 791640 Query 93542 TTCTCATCATCTTTAAGCTT---ATCCCAATC 93570 ||||| ||| || ||||| |||||| || Sbjct 791639 TTCTCGTCAGAATTTAGCTTTTCATCCCACTC 791608 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||||| | ||||||||| || ||| | |||||||||||||||||||| ||||| || Sbjct 791414 ACTTCTTCTATAGTCCAAAAGGAGGCTACAGCTTTTTTGTACATATCCCAGATGTCAGGA 791355 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684 || ||||| || || || ||||| ||||| || Sbjct 791354 TACTGAATAGGGAACATTACAAAGCGATTTGG 791323 >seq27024 Length=1133 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 130 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 71 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 70 GTTCGAACCCCACACCTGGCAAATTTTT 43 >seq6511 Length=3315862 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 1685370 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 1685311 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 1685310 GTTCGAACCCCACACCTGGCAAATTTTT 1685283 >seq6532 Length=1651379 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 250971 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 250912 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 250911 GTTCGAACCCCACACTTAGCAAAT 250888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556319336401120