Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq34431 118 9e-22 seq34430 107 2e-18 seq6476 107 2e-18 seq7367 89.7 4e-13 >seq34431 Length=440 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| || || ||||| | |||||||||||||| || | ||| ||| || Sbjct 202 AATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACTCTCGAAGTTGAAGCCTC 261 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | |||||| || || |||||||||||| ||||| ||||| Sbjct 262 TGACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGGATCA 321 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | | |||| || ||||| ||| | |||||| || |||| | |||| ||||| Sbjct 322 ACAGCGTTTGATTTTCGCTGGCAAGCAACTCGAAGATGGTAGAACTCTTTCCGACTATAA 381 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || |||||||| ||||| || ||||| || ||||||| || || |||| Sbjct 382 CATCCAAAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGGCA 431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||||||| ||||| |||||||| | || |||| ||| ||||| ||| | ||| Sbjct 68 GACAAAGAAGGCATTCCCCCGGATCAACAGCGTCTGATTTTTGCCGGCAAGCAACTCGAA 127 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| | ||| | | |||||||| || ||||| ||||||||||| || | || || Sbjct 128 GATGGCAGGACTCTTTCAGATTATAACATTCAAAAGGAATCTACACTTCACCTGGTTCTG 187 Query 111400 CGTCTGCGCGGTGG 111413 ||||| || || || Sbjct 188 CGTCTTCGAGGAGG 201 >seq34430 Length=319 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | |||||||||||||| ||| | ||| ||| || Sbjct 82 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 141 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | |||||| || || |||||||||||| ||||| ||||| Sbjct 142 GACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 201 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| ||||| ||| | |||||| | ||| | | |||||||| Sbjct 202 CAGCGTTTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAAC 261 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||| ||||| || ||||| || ||||||| || || |||| Sbjct 262 ATCCAGAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGGCA 310 >seq6476 Length=10381176 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||||||||| ||| | ||| ||| || Sbjct 5656906 ATGCAAATCTTTGTGAAAACTCTCACTGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 5656965 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | |||||| || || |||||||||||| ||||| ||||| Sbjct 5656966 GACACAATCGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGGATCAG 5657025 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| ||| ||||| ||| | |||||| | ||| | | |||||||| Sbjct 5657026 CAGCGTCTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAAC 5657085 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||| ||||| || ||||| || ||||||| || || |||| Sbjct 5657086 ATCCAGAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGGCA 5657134 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | |||||||||||||| ||| | ||| ||| || Sbjct 5657134 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 5657193 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || || ||||| ||||||||||| |||| |||||| Sbjct 5657194 GACACAATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 5657253 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| || ||||| || ||||||| | ||| | ||||||| || Sbjct 5657254 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGACGGCAGAACCCTTTCCGATTACAAC 5657313 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || ||||||||||||||||| || ||||| || || || ||||| ||| Sbjct 5657314 ATCCAAAAAGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGGC 5657361 >seq7367 Length=54923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||||||||| | |||| ||| ||||| |||||||||||| | ||| || | ||| Sbjct 20422 GATCAACAAAGATTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGGACTCTGTCGGAT 20363 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC---GCGGTGGCAAT 111417 ||||| || || |||||||| || |||| || |||||||| ||| |||||| ||| Sbjct 20362 TATAACATCCAGAAAGAATCCACTTTACACTTGGTGTTGCGCTTGCGAGGCGGTGCCAAG 20303 Query 111418 AAA 111420 ||| Sbjct 20302 AAA 20300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422638940629600