Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq6597 91.5 4e-15 seq6527 78.8 2e-11 >seq6597 Length=2093647 Score = 91.5 bits (100), Expect = 4e-15 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 3373 TTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCG 3432 || ||||||||||| |||||||| | | | | |||| |||||||| || ||| Sbjct 2063399 TTCCACAAATACGGACCTTCGGGTACGATACAGCAGCACGATTCTCTCTGCATTCTGCCG 2063458 Query 3433 GAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCC 3492 |||| | ||||||||||||| ||||| ||| ||||||||||||||| | | || ||| Sbjct 2063459 TTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTCTGGTTCTTCATACTGGCC 2063518 Query 3493 ATCAT 3497 ||||| Sbjct 2063519 ATCAT 2063523 Score = 89.7 bits (98), Expect = 1e-14 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||| | || ||||| || | || | ||| || |||||| | Sbjct 2026916 TGCACATTCCACAAGTATGGTGCGTCCGGCTCGGTGCAGAAGTTCGACGGGCTCTGCGTG 2026975 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || ||| ||| | |||||||||||||||||| | |||||||||||||||||| | | Sbjct 2026976 CTGCCGCTCAACATCGTCAACGAGAAGATCTACGTGTTCCTCTGGTTCTGGTTCATCATC 2027035 Query 3487 CTAGCCATCATCAGCGG 3503 || | ||| | ||||| Sbjct 2027036 CTGTCGATCCTGAGCGG 2027052 >seq6527 Length=1545731 Score = 78.8 bits (86), Expect = 2e-11 Identities = 105/146 (72%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 |||| ||| |||| | ||||| | || || ||||| |||||| || ||| || Sbjct 943793 ACCCTATGGCGCGATTGTTTCCGAAGATGACCAAGTGTACGATTCACACATTCGGGCCCG 943734 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 |||| ||| | | | |||| | || ||| | |||||| ||||||||| ||||||| Sbjct 943733 CGGGTTCCGTACAGACTCACGATGCCCTGTGCGTGCTCCCGCTGAACGTGGTGAACGAGA 943674 Query 3452 AGATCTACATTTTCCTCTGGTTCTGG 3477 |||||| ||| | |||||||||||| Sbjct 943673 AGATCTTCATCGTTCTCTGGTTCTGG 943648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12469381938000