Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq2061 297 2e-75 seq2042 224 1e-53 seq3161 82.4 8e-11 >seq2061 Length=505 Score = 297 bits (328), Expect = 2e-75 Identities = 343/469 (73%), Gaps = 1/469 (0%) Strand=Plus/Plus Query 108428 TGAAATTGCCCTCCGAAGAGGGCATGTTCCATCAGGAAGCGGCTACGATGCCACCGCCAG 108487 |||||| ||||||||||||||||| | | || ||||| |||||||| |||| Sbjct 7 TGAAAT-GCCCTCCGAAGAGGGCACACATTGTTATGACGCGGCCACGATGCCCATGCCAC 65 Query 108488 TTTCGATCTCGCTGAACTCCATGTCCGGACGTACTGCAGCAAAGTCCAGATACACCCAGT 108547 ||| | ||| |||| | ||||||||||| || || || || || || || | ||||| Sbjct 66 CTTCCACTTCGGAGAACGCAATGTCCGGACGGACGGCTGCGAAATCGAGGTAGATCCAGT 125 Query 108548 TGATGGAGTATTCTGGTTTCAGCCAGATACCCGCAACCATCTGGTTCGCAGCGATGNNNN 108607 ||||| |||||||||||||||||||||||| || | ||| ||||| || || | Sbjct 126 TGATGCTGTATTCTGGTTTCAGCCAGATACCTGCGATCATTTGGTTGGCGGCTACAACCG 185 Query 108608 NNNNNNNNNNNNNNNNNNNNTCGCACTTCACCTGACCATCGTAGATCGCACCCATGTTGG 108667 || || || |||| ||||||| ||| ||||||||| | Sbjct 186 AAGCCGGGTTGTTGTCTTCGTCACATTTGACCTTACCATCGACGATTGCACCCATGCCGA 245 Query 108668 CCAGCTGGCGGATATACGGGCGTACAGCGTTGCTGAACAGGCTACGAGTGAATTCATCGT 108727 ||||||||| | ||| ||| || |||||| |||||| || || || |||||| Sbjct 246 TCAGCTGGCGAACATATGGGGTGACCGCGTTGGTGAACAACTGGCGCGTAAACGCATCGT 305 Query 108728 TGTTCTCACCAAGGTAGTATTTGGCGATGGCAGCGATGTTCTGCTCGGCCATGATGAACA 108787 | ||||| || ||||||||||| || ||||||| |||||| ||| |||||||| || Sbjct 306 TATTCTCGCCCAGGTAGTATTTAGCAATGGCAGAGATGTTGGTCTCAGCCATGATAAAAG 365 Query 108788 GACCGCGAACGTTGATGCGGTCAAACGCAGACGGGCGAGTCAGACCAGTCTTGTCGCCGT 108847 ||| || |||||||||||||| |||||| ||||| ||||| || || ||||| |||| Sbjct 366 TACCACGGACGTTGATGCGGTCGAACGCACTTGGGCGGGTCAGGCCGGTTTTGTCACCGT 425 Query 108848 ACAGCACGATGCCTTCGTTGGAGAAGGTGACGATGCTGTTGATCTGGTT 108896 ||| |||||||||||| ||| |||||| |||||||||||||||||||| Sbjct 426 ACAACACGATGCCTTCAGTGGTGAAGGTAACGATGCTGTTGATCTGGTT 474 >seq2042 Length=482 Score = 224 bits (248), Expect = 1e-53 Identities = 326/458 (71%), Gaps = 7/458 (2%) Strand=Plus/Plus Query 106452 GATGTTCTTCAGGATCAGCTGACGACGAAGAAGTTCAAGGAAGAATCCTGAATAACGACG 106511 ||| || |||| ||||| ||| |||||||| || | | ||||| ||| || || || Sbjct 27 GATCTTTTTCATGATCAACTGTCGACGAAGCAGGCCCAAGAAGATGAGTGAGTACCGGCG 86 Query 106512 ACGCAGGCCTGCGCAGAATTTGTTGAAGCGCAGTTCTTCCTGGGTGATTTCAGCAAGATT 106571 ||||| | || ||||| || |||||||| || || | || | |||| | |||| Sbjct 87 GCGCAGACGAGCACAGAACTTCTTGAAGCGATTCTCATCACGAGTTACTTCACCGAGATC 146 Query 106572 GGAACCACCGATGTTGATGGAACCTTCC---TCTTGGAGGCGGCTCTTAGGGATCATCAG 106628 || ||||| |||||| || | || | | ||||||||||| ||| | || Sbjct 147 ACTCCCGCCGATATTGATGTTGCCGCCACCGTCATCCAATCGGCTCTTAGGAATCTTGAG 206 Query 106629 AGCCTCGTAGAGCTTCTCGCGGAAGTATACCACATGATCCATTTGACCCAGTTGATCGCC 106688 ||| |||| ||||| ||||||||| ||||||||||||||| ||||| || || || Sbjct 207 AGCACCGTACAGCTTGCTGCGGAAGTAATTCACATGATCCATTTGGCCCAGCTGGTCACC 266 Query 106689 ACCACCTACGTTGGATATCTCCGTTGCGTTCTGCCCTTCGCGGCGCGGCAACCAGTAGTC 106748 ||||| | | || ||| || || |||||||| || || || || |||| ||||||||| Sbjct 267 GCCACCGATGGTGCTTATTTCGGTCGCGTTCTGTCCCTCACGACGTGGCATCCAGTAGTC 326 Query 106749 TTCAGCGATACCCATCAGATGGGTATTGCCTGCCACTTTACCAGTGGTGCGATCATACGC 106808 |||||||||||||| || || || | |||| || || || || || | ||| | Sbjct 327 CTCAGCGATACCCATGAGGTGAGTGTCGCCTTGTACCTTGCCGGTCTGACGGTTATATGA 386 Query 106809 CAGACGGTTCTTGAATTTACCCATCATGGCTTG--CATGTATTCTTCGGCCGACTTCTTG 106866 ||| |||||| || || |||||||| | || ||| || ||||| || || ||||| Sbjct 387 CAGGTTGTTCTTAAACTTGCCCATCAT--CATGGCCATATACTCTTCAGCGGATTTCTTA 444 Query 106867 CCCAGCGTACCCACGTCGAGATAGAACGCTCGCTTCTC 106904 |||| | |||| ||||| || ||||| || |||||||| Sbjct 445 CCCAACATACCGACGTCAAGGTAGAATGCGCGCTTCTC 482 >seq3161 Length=466 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 91184 TCGGTGACCTGCTCGGGATGAATGACCTTCACCATGTTCCACTGCTCAAGCAGCTTGATG 91243 || |||| ||| || ||||| ||| | |||| |||||||| ||||| ||| Sbjct 455 TCAGTGATCTGTTCAGGATGCTTGATACGAATCATGCCACACTGCTCTAGCAGGCGGATA 396 Query 91244 ATG-CGGTTCATCCTCAGGACATCTTCGCGGTTAAACCCGTTGTAATGTCCGTCCAGCAT 91302 ||| |||||||| | ||||| |||||| ||| || ||||| | | || || | ||| Sbjct 395 ATGACGGTTCATGCGCAGGATATCTTCCCGGCACAATCCGTTACGACGCCCCTCAAACAT 336 Query 91303 AAACAGATGCTTGAAGTGGACGATATAATACTTGCCATACTTATGAAGAATATGACAAGT 91362 | | | ||||||||||| ||||| |||||||| || || ||||| || || Sbjct 335 ATAGAAGTGCTTGAAGTGAACGATGTAATACTTCCCGCCGCGCTGGGTGATATGGCAGGT 276 Query 91363 CTGATACAGA 91372 |||||||||| Sbjct 275 CTGATACAGA 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504999685631680