Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq34431 111 1e-19 seq34430 111 1e-19 seq6559 107 1e-18 seq6476 105 5e-18 seq24285 86.0 4e-12 seq61286 84.2 2e-11 >seq34431 Length=440 Score = 111 bits (122), Expect = 1e-19 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | |||||| |||||||| | || |||||||| || ||||| |||| Sbjct 430 GCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCGG- 372 Query 39552 CAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 || | |||| ||| || | ||| || || | ||||| |||||||| ||||||| Sbjct 371 ---AAAGAGTTCTACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCG 315 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | |||||||||||| || || ||| | || | | |||||| | | || Sbjct 314 GGGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTT 255 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | ||| || ||||| || || | |||||| |||||||| ||||| Sbjct 254 CAACTTCGAGAGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 203 >seq34430 Length=319 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | |||||| |||||||| | || ||||| || || |||||||| | Sbjct 309 GCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGA 250 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | ||| || ||| ||||||| |||||||||||||| | ||| Sbjct 249 AAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAAACGCTGCTGATCTGGGGG 190 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || ||| | || | | |||||| | | ||| || Sbjct 189 AATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAAC 130 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||| || || | |||||| |||||||| |||||| Sbjct 129 TTCGAGGGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATG 81 >seq6559 Length=1815223 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || |||||||||||||| ||| || || ||||| || || | Sbjct 1624882 CCACCACGTAAACGGAGCACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAA 1624823 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || || | ||| || |||| || Sbjct 1624822 AGTGTGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCCGGTGGA 1624763 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| |||||| ||| | || | | |||||| | ||| || Sbjct 1624762 ATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTCTCGATTGTGTCCGAAGCTTCAACC 1624703 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || | ||||| |||||||||||||| Sbjct 1624702 TCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCAT 1624656 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| || || |||||||| | |||| ||| || || ||||| || || | | Sbjct 1624654 CCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCTGAC 1624595 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || || | || || || | || || |||||||||||||| | || Sbjct 1624594 AAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGG 1624535 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || || ||| | || | | ||||| | ||| || Sbjct 1624534 ATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCGACC 1624475 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || |||||||| |||||||||||||| Sbjct 1624474 TCCAAAGTGATAGTCTTTCCTGTCAAAGTTTTAACGAAGATCTGCAT 1624428 >seq6476 Length=10381176 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | |||||| |||||||| | || ||||| || || |||||||| | Sbjct 5657133 GCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGA 5657074 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | ||| || ||| ||||||| | |||||||||||||| ||| Sbjct 5657073 AAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGGGG 5657014 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || ||| | || | | |||||| | | ||| || Sbjct 5657013 AATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCGATTGTGTCAGAGGCTTCAAC 5656954 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || | |||||| || ||||| ||||| Sbjct 5656953 TTCGAGGGTGATGGTTTTGCCAGTGAGAGTTTTCACAAAGATTTGCAT 5656906 >seq24285 Length=372 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| || || |||||||| | |||| ||| || || ||||| || |||| | Sbjct 313 CCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAC 254 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | || || || | || || |||||||||||||| | || Sbjct 253 AGGGTACGCCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGG 194 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || || ||| | || | | ||||| | ||| || Sbjct 193 ATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCAACC 134 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || | ||||| |||||||||||||| Sbjct 133 TCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCAT 87 >seq61286 Length=444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAAC--GCGTTCA 39564 || |||||||||||| ||| |||||| || || || ||||| | ||| | ||| | Sbjct 180 CAATACCAAATGCAACGTGGATTCTTTCTGAATGTTGTAATCAG--AAAGCGTGCGGCCG 237 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||| ||| |||| || || | ||||||||| | ||| | ||||| || Sbjct 238 TCCTCGAGCTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTA 297 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAAT 39683 || ||||| ||| | || | | ||||| | ||| || || ||||| || || Sbjct 298 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGACGC-CTCAACTTCCAACGTGAT 356 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| ||||| |||||||| Sbjct 357 GGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347040279290204