Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8374 122 1e-22 seq56730 102 9e-17 seq21728 95.1 1e-14 seq19277 82.4 9e-11 >seq8374 Length=807232 Score = 122 bits (134), Expect = 1e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||| ||||||||||| || || ||||| ||||| ||||| | |||||| Sbjct 791795 TACATCTCAGAATGGATATTTTCTATGGCAATTTGAAAGCCGTAGAAACAACGTGCTTCA 791736 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || || | ||||| || |||||||| | |||||||||||||| || || ||| | Sbjct 791735 GTGATTTTCACTTCCTGACTGAATCTTTCAATTAAATTTTCATTAACAATACCGTCAGAA 791676 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421 || || |||||||| || ||||| ||||||| ||| || || || Sbjct 791675 GCGGCGAAAAATGCCAAGACATGAGAGATAAAATATTTCTCGTCAGA 791629 >seq56730 Length=29830 Score = 102 bits (112), Expect = 9e-17 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 |||||| | |||||||||||||| ||||| || | |||||||||||||| || ||||| Sbjct 29369 ATTGCCGATGTTCCTTTTAAGTTCCAGAAAATCGAAGATATCAGCATGCCACGGCTCTAA 29428 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 ||| || || | | ||||||| || || ||||||||||| || || |||| ||| Sbjct 29429 ATAAATAGCAAACGCCCCTGGTCTCTTGTTTCCTCCTTGATCAATGTAAATGGCTATATC 29488 Query 48389 GTTATA-AACT 48398 |||||| |||| Sbjct 29489 GTTATACAACT 29499 >seq21728 Length=474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 |||||||||||||| ||||| || | ||||||||||||||||| |||||||| || || Sbjct 259 TTCCTTTTAAGTTCCAGAAAATCGAAGATATCAGCATGCCATGGCTCTAAATAAATAGCA 318 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA-AAC 48397 | | ||||||| || || ||||||||||| | || |||| | | |||||| ||| Sbjct 319 AACGCCCCTGGTCTCTTGTTTCCTCCTTGATCAACGTAAATGGCTATTTCGTTATACAAC 378 Query 48398 TCTTAA 48403 | |||| Sbjct 379 T-TTAA 383 >seq19277 Length=615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/125 (75%), Gaps = 5/125 (4%) Strand=Plus/Minus Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT----AT 48334 |||||||||| || ||||| || | |||||||||||||| || ||||||||| || Sbjct 236 TTCCTTTTAAATTTCAGAAAATCGAAGATATCAGCATGCCACGGCTCTAAATATGTAAAT 177 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | | ||||||| || || ||||||||||| || || |||| ||| |||||| Sbjct 176 AGCAAACGCCCCTGGTCTCTTGTTTCCTCCTTGATCAATGTAAATGGCTATATCGTTATA 117 Query 48395 -AACT 48398 |||| Sbjct 116 CAACT 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561562233508320