Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_016071.1 Length=145964 Score E Sequences producing significant alignments: (Bits) Value seq1998 264 1e-65 seq43336 161 9e-35 seq1985 134 1e-26 >seq1998 Length=468 Score = 264 bits (292), Expect = 1e-65 Identities = 320/430 (74%), Gaps = 13/430 (3%) Strand=Plus/Plus Query 57880 TCGTTACCAAGGTTGATGAATCCAGCGCCAAATCTGTCGAGGATTGCCTTCTTACGAGAG 57939 || ||||| | ||| || || |||||||| || | ||| | ||| | ||||||||| Sbjct 14 TCATTACCTACGTTCATAAAGCCAGCGCCGAAGCGGTCCAAGATAGACTTCTTACG---- 69 Query 57940 TTCACCAGTTC---CTGT-GTACTGTACTGCTTACCTGCACCGTCAATCCCTTTAAGAGA 57995 ||||| || ||| || || ||||||||||| | ||| || || |||||||| | Sbjct 70 TTCACTGATTAGGGCTGAAGTGCTATACTGCTTACCGGAACCTTCGATACCTTTAAGTGT 129 Query 57996 CATCTTGTACTGTTCACCACCCTGAGCGTTCATATCTGAAGGCAGGATGAAGTAGGCTTG 58055 ||| | | | | | | | ||||||||||| |||| |||||| |||| || Sbjct 130 CATGGAGAA---TGCTGGGGCGTTTTCCTTCATATCTGACGGCAACATGAAGAAGGCCTG 186 Query 58056 CTCACCTGCGTGGGCGTTTGCAGCATCCGCCATCAATCCTTGAACCATTTCTGATTCTGG 58115 |||||||||||||||||| || |||||| ||||||||||| ||||||||| | |||||| Sbjct 187 CTCACCTGCGTGGGCGTTAGCCGCATCCTGCATCAATCCTTCAACCATTTCAGCTTCTGG 246 Query 58116 TGATTTCGGGTCAATCGCTGCCTTGTTCAAGAT-CTGAGAAGGGATCTTGAGTTCGATGA 58174 ||| ||| || ||||||||||| | ||| ||| ||||| ||||| || || |||| Sbjct 247 GCTATTCTTGTCGATTGCTGCCTTGTTAAGGATACTG-GAAGGAATCTTAAGCTCAATGA 305 Query 58175 TACCACCAAGATCTTTGGAAGCACCAATTGTTTCGAGGTTCTCAATCAGAATCTTTTCAC 58234 | || || || || || | || || || ||| | ||||||||| |||| |||||| | Sbjct 306 TCCCGCCGAGGTCCTTAGTTGCCCCGATGACTTCCAAGTTCTCAATAAGAACCTTTTCTC 365 Query 58235 GGAAAGCACGGTAACACCCAACAAGAGGAGAAACACCAGCAGGGTTTGACTCTGTACCAC 58294 ||||||| |||||||| ||||| ||||| |||||||| ||||||||| || ||||||| Sbjct 366 GGAAAGCGCGGTAACAACCAACTAGAGGTGAAACACCCATAGGGTTTGAGTCAGTACCAC 425 Query 58295 CAAGACTCAT 58304 ||| ||||| Sbjct 426 CAAAGCTCAT 435 >seq43336 Length=1079 Score = 161 bits (178), Expect = 9e-35 Identities = 322/472 (68%), Gaps = 4/472 (1%) Strand=Plus/Minus Query 60016 GGGTTACATGAGATGACCATACGGCTTGGGTATTTGGATTCAGAACGAAGACGAGACATG 60075 ||||||||||| || ||||| ||| |||||||| || ||||| | ||||||||| Sbjct 1078 GGGTTACATGACATAACCATTCGGGACGGGTATTTAGAAGATGAACGCAAACGAGACATC 1019 Query 60076 AGGTATTCGATCTGAGACCATTCAAACTGTGTTCCTTCGTCAAAACCAACAAAGGTGTAC 60135 | |||||||| ||| |||||||||||| || ||||||| | || | ||| || | Sbjct 1018 ATGTATTCGAGCTGTTCCCATTCAAACTGGGTGGCTTCGTCTACGCCTATAAAAGTAAAT 959 Query 60136 TGTAGACCCTG-GTGAGAATACTTATCTTTCTCGTATTCCATGTGGGACCATTTTACTTT 60194 | ||| ||||| || || ||| | || ||| | ||| ||| || ||||| Sbjct 958 TCTAGGCCCTGAATGTCAA-GCTTGTTCTTTACGTGCTGCATCGACTGCCACTTAACTTT 900 Query 60195 AGCACCAGAAGGGAAAATTGCTTCCAGGTCTTTCTCCCTGAAGCGTGGTTTCCATTCCGG 60254 ||| || ||||| | ||||||| || ||||| | || |||||||| | | Sbjct 899 AGCCCCGTTTGGGAATAAAGCTTCCATCTCATTCTCACGAAATCGTGGTTTAGAGTTGAC 840 Query 60255 ATCAAGCTGTGTATAAATGCCTCGTGCTGTATCATACAGACCACCACCACCCTTCAACTG 60314 ||| || || ||||||| || || | ||| |||||||||| ||| | ||| Sbjct 839 ATCGAGTTGGTTATAAATATCTTTAGCCTTGTCAAACAGACCACCTTGACCACGTAGCTG 780 Query 60315 AGGGGTGTTTCTACGGAACATGATGCAGTTCGTTCGTGGATCGTCGATGATATTTAACGG 60374 || || |||||||||| ||| ||||| || ||||| || ||| | || Sbjct 779 TGGTACTGATCGGCGGAACATGACACAGGCTGTTCGCGGGTCGTCAATAATAAACAGAGG 720 Query 60375 CATTAATTGAAGCAGGTAGGATTTACCTGACCCCGCCGCACCCCCAATGATCAGGATTTG 60434 |||||| |||||||| ||||| || ||||| || || ||||| || ||||| || || | Sbjct 719 CATTAACTGAAGCAGATAGGACTTCCCTGAACCAGCAGCACCGCCGATGATTAGAATCTC 660 Query 60435 TGCGT-TGTTTTCCAGGATCATTTTCTGCTTAGGGCTGGCAGGTCCGAATGT 60485 |||| || ||| |||||||| | || ||| ||||| || |||| || Sbjct 659 AGCGTCTGATTT-AAGGATCATCTGTTGTTTAATACTGGCGGGAGCGAACGT 609 >seq1985 Length=318 Score = 134 bits (148), Expect = 1e-26 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 45925 GGGATTGTGATCACCGGATCGTAGAACACTTTGTTAACGTCATCGTATCCAGTAAGGATA 45984 || || ||||| | || |||||||| || ||||| | ||||| ||||| || | ||| Sbjct 43 GGAATGGTGATGATTGGGTCGTAGAAGACCTTGTTTTCCTCATCATATCCGGTTAAGATG 102 Query 45985 GACCCGTTTGCAATACCAACGTTGATCGGGTTGTTCATCATGACAGATTTCAGGTTAGGA 46044 || || || |||||| ||||| || || | ||||| || |||| ||||||| || Sbjct 103 GAACCATTACGAATACCTACGTTAATAGGATCGTTCAGGATCACAGTGCTCAGGTTTGGC 162 Query 46045 AGATCGTCATCACTCATCTTCATGGAGAGACCCATGTTAGAACGGCGAGACATGTATCCA 46104 | || || || |||||||||||||| | ||||||||| || || | |||||| Sbjct 163 AAGTCATCGTCGCTCATCTTCATGGACATACCCATGTTTGAGCGCTGGTGCATGTAGGAG 222 Query 46105 AACACACTTTCTTCTGTACGGAATTTCAGCCAGTGACCGAAACGAACAACGTCAACGTAG 46164 || || ||||| ||||||| |||| |||||| || || | ||||||| | || Sbjct 223 AATACTGACTCTTCCATACGGAACTTCAACCAGTGGGANAAGCGGATAACGTCAGCATAC 282 Query 46165 TTACCAGAAGCACACTTACCT 46185 |||||||| ||| |||||| Sbjct 283 NGACCAGAAGAACATTTACCT 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466502754555520