Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6476 141 6e-28 seq34430 136 3e-26 seq34431 132 3e-25 seq6490 122 6e-22 seq6511 104 2e-16 seq6559 93.3 3e-13 >seq6476 Length=10381176 Score = 141 bits (156), Expect = 6e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || |||||||| ||| ||| || | || ||||||| |||||| Sbjct 5656898 CGAAGACGTAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTT 5656839 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| ||| || |||||||| |||||||| || | |||||||||||| |||||||| ||| Sbjct 5656838 CTGCCATCCTCTAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCT 5656779 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| || ||||| ||||||| || ||||| |||| | || ||| Sbjct 5656778 TCTTTGTCCTGGATCTTAGCTTTGACATTCTCTATAGTGTCAGAAGCTTCCACCTCGAGG 5656719 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || ||||| || ||||| ||||| Sbjct 5656718 GTGATGGTTTTTCCAGTAAGAGTTTTCACGAAGATTTG 5656681 Score = 114 bits (126), Expect = 8e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || | || | || |||||| |||||| | || ||||| | || ||| Sbjct 5657354 CGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCGGAAAGGGTT 5657295 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| ||||| || ||||| ||||| ||||| | ||| |||||||| || ||||||||| Sbjct 5657294 CTGCCGTCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCT 5657235 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| || || || || || ||| || || |||| | | | ||| ||| Sbjct 5657234 TCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGG 5657175 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||||||||| || ||||| ||||| Sbjct 5657174 GTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTG 5657137 >seq34430 Length=319 Score = 136 bits (150), Expect = 3e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | ||| || ||| ||||| | |||||||| | ||||| Sbjct 302 CGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAAAGAGTC 243 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| |||||| |||||||| || |||||||| | ||| || ||||| || ||||| ||| Sbjct 242 CTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATGCCT 183 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || |||||||| ||||| ||| || ||||| || |||| | | | ||| ||| Sbjct 182 TCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACTTCGAGG 123 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||||||||| || ||||| ||||| Sbjct 122 GTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTG 85 >seq34431 Length=440 Score = 132 bits (146), Expect = 3e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | ||| || ||| ||||| | ||||| || | |||||| Sbjct 423 CGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTATAGTCGGAAAGAGTT 364 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 || |||||| |||||||| ||||| ||||| | ||| |||||||| || ||||| ||| Sbjct 363 CTACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGGGGAATGCCT 304 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || |||||||| ||||| ||| || ||||| || |||| | | | ||| || Sbjct 303 TCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAGGCTTCAACTTCGAGA 244 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||||||||| || ||||| ||||| Sbjct 243 GTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTG 206 >seq6490 Length=3818771 Score = 122 bits (134), Expect = 6e-22 Identities = 253/367 (69%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||| |||||||||||||| ||| || || ||| | || ||||| |||| ||| Sbjct 1910466 TTAGATGCCAAAAGATTGATTGGACGTCGCTTCGAGGATCCAACCATCCAAGCTGACATG 1910407 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAATAC 474632 || ||||| || | || |||| | |||| | || ||| | || ||| |||||| Sbjct 1910406 AAACACTGGCCCTTCACTGTTGTAAACGATGGTAGCAAGCCAAAGATCCAAGTACAATAC 1910347 Query 474633 ACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAA 474691 | ||| || || || || | ||| || ||| || | ||| ||||| | | ||| Sbjct 1910346 A--AAGGAGAGACGAAGACTTTCTTC-CCCGAAGAAGTGAGTTCGATGGTCCTGGTGAAA 1910290 Query 474692 ATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTG 474749 ||||| | ||||| ||| | || || || ||||| || || |||| || || || | Sbjct 1910289 ATGAAGGAGACCGCAGAG-GCGTACCTAGG-CAAGACTGTCACCAATGCCGTGATCACCG 1910232 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 |||| || || || || || || || ||||| ||||| || || || || | || | | Sbjct 1910231 TTCCCGCTTACTTCAACGACTCGCAGCGTCAGGCAACCAAGGACGCTGGTACCATCTCGG 1910172 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 | | || ||||| ||||| ||||| || || || || ||||| |||| || || || | Sbjct 1910171 GCTTGAACGTTTTGCGTATCATTAACGAGCCCACCGCCGCCGCGATTGCATACGGCCTCG 1910112 Query 474870 ATAAGAA 474876 | ||||| Sbjct 1910111 ACAAGAA 1910105 >seq6511 Length=3315862 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||||| |||| || |||||||| ||||| |||||||| || || || || ||||| || Sbjct 2206097 AGTAAAGAATGCTGTTATTACTGTACCAGCGTATTTTAACGACTCACAGCGACAAGCGAC 2206038 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 ||| ||||| || ||| | || | ||||| | ||| | |||||||| ||||| || Sbjct 2206037 TAAGGATGCTGGTCAGATTTCTGGATTAAATGTGCTTCGTGTAATTAATGAGCCAACCGC 2205978 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAA 474873 ||| || ||||||||||| | ||||| Sbjct 2205977 AGCTGCGCTTGCTTATGGCATGGATAA 2205951 >seq6559 Length=1815223 Score = 93.3 bits (102), Expect = 3e-13 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 480581 TTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAA 480640 |||||| || |||||||||| || || | ||| || ||||| ||||| ||||| Sbjct 1625075 TTCTTTCTGAATGTTATAATCAGAGAGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAA 1625016 Query 480641 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGC 480700 || | | ||| ||||| || || |||||||||||||||||||| || ||||||| Sbjct 1625015 GATCAACCTTTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATT 1624956 Query 480701 TTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAA 480759 || || || || | | | || || ||| || || || || || || | |||||| | Sbjct 1624955 CTCGATCGTGTCTGACGCCTCAACTTCCAA-CGTGATGGTCTTTCCTGTCAAAGTCTTGA 1624897 Query 480760 CGAAAATTTG 480769 |||||||||| Sbjct 1624896 CGAAAATTTG 1624887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264842495252624