Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq34431 140 6e-28 seq6559 136 7e-27 seq61987 125 1e-23 seq34430 120 5e-22 seq6476 114 2e-20 seq24285 102 1e-16 >seq34431 Length=440 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || |||| ||| | |||| |||||| || ||| Sbjct 438 ATTTGCATGCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTTTGGATGTTA 379 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | |||||| ||| || | ||| || || || ||||| || | ||||||| Sbjct 378 TAGTCGGAAAGAGTTCTACCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGCTGTTGA 319 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| ||||| || ||| || || || Sbjct 318 TCCGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAG 259 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||||| ||||| || ||||| || || || ||||| || || ||||||||| Sbjct 258 GCTTCAACTTCGAGAGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATT 202 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || ||||| || | ||||| || || ||| ||| Sbjct 210 ATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCCTTTTGAATGTTA 151 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || || ||| || | ||| || ||||||||||| | | ||||||| Sbjct 150 TAATCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAGACGCTGTTGA 91 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| ||||| || || || || || Sbjct 90 TCCGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCGATTGTGTCAGAT 31 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACC 193333 | |||||||| || || || ||||| || Sbjct 30 GCTTCAACTTCGAGGGTGATGGTTTTGCC 2 >seq6559 Length=1815223 Score = 136 bits (150), Expect = 7e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || |||| |||||| |||| || || |||||| Sbjct 1624892 AATTTGCATACCACCACGTAAACGGAGCACCAAATGCAAAGTAGATTCCTTCTGAATATT 1624833 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| || | |||||||||||||| || ||||||||||| Sbjct 1624832 GTAGTCAGAAAGTGTGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTG 1624773 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| || || ||||| | ||| | ||| || || || || Sbjct 1624772 GTCCGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTCTCGATTGTGTCCGA 1624713 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | ||| || || || ||||| || ||||| || || || |||||| Sbjct 1624712 AGCTTCAACCTCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCATT 1624655 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | || | ||||||||| | ||||| ||| || Sbjct 1625120 AATTTGCATACCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTT 1625061 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | ||| | | ||| || | ||||||||||||||| || || || || || Sbjct 1625060 ATAATCAGAGAGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTG 1625001 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || ||||| ||||||| ||| | ||| || || || || Sbjct 1625000 ATCTGGGGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGA 1624941 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | || || || || ||||| | || || || || |||||||| Sbjct 1624940 CGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 1624884 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||| || |||| ||| | || | || || ||||| ||||| Sbjct 1624657 ATTCCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCT 1624598 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | || || | || ||||| || || || || | ||| |||||||| Sbjct 1624597 GACAAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGC 1624538 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | ||| | ||| ||| || || |||| || Sbjct 1624537 GGGATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCG 1624478 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| ||||| || ||||| | ||||| || || || |||||| Sbjct 1624477 ACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTTTTAACGAAGATCTGCATT 1624427 >seq61987 Length=372 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | || | ||||||||| | ||||| ||| || Sbjct 52 AATTTGCATACCACCGCGAAGTCTCAAAACTAAATGCAATGTGGATTCTTTCTGAATGTT 111 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | ||| | | ||| || | ||||||||||||||| || || || || || Sbjct 112 ATAATCAGAGAGCGTGCGACCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTG 171 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| ||||| || ||||||| ||| | ||| || || || || Sbjct 172 ATCTGGGGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCAGA 231 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | || || || || ||||| | ||||| || || || ||||| Sbjct 232 CGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 288 >seq34430 Length=319 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || |||| ||| | |||| |||||| || ||| Sbjct 317 ATTTGCATGCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTA 258 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || || ||| || | ||| || ||||||||||| || | ||| ||| Sbjct 257 TAATCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAAACGCTGCTGA 198 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| ||||| || ||| || || || Sbjct 197 TCTGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCAATTGTGTCAGAG 138 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| || || || ||||| || || || ||||| || || |||||||| Sbjct 137 GCTTCAACTTCGAGGGTGATGGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 82 >seq6476 Length=10381176 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || |||| ||| | |||| |||||| || ||| Sbjct 5657141 ATTTGCATGCCTCCTCGAAGACGCAGAACCAAATGGAGCGTAGACTCTTTCTGGATGTTA 5657082 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || || ||| || | ||| || ||||||||||| | | ||| ||| Sbjct 5657081 TAATCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCAAAAATCAGACGCTGCTGA 5657022 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| ||||| || || || || || Sbjct 5657021 TCCGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTTACGTTCTCGATTGTGTCAGAG 5656962 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| || || || ||||| || || || ||||| ||||| |||||||| Sbjct 5656961 GCTTCAACTTCGAGGGTGATGGTTTTGCCAGTGAGAGTTTTCACAAAGATTTGCAT 5656906 Score = 96.9 bits (106), Expect = 6e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 193163 TGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCC 193222 ||||| ||||| || || || ||||| | ||||| || || | || || || Sbjct 5657331 TGTAGATTCTTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCGTCTTCCAGCTGCTTGCC 5657272 Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| || | ||||||||| || || ||||||||||| || || ||||||| || Sbjct 5657271 AGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTGGCCTT 5657212 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| || || || || | |||||||| || || || ||||| || || || || Sbjct 5657211 CACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTGCCGGTGAGAGT 5657152 Query 193343 TTTTACAAATATTTGCAT 193360 ||| || || |||||||| Sbjct 5657151 TTTCACGAAGATTTGCAT 5657134 >seq24285 Length=372 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||| || |||| ||| | || | || || ||||| |||||| Sbjct 316 ATTCCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCG 257 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || ||||| || || || || | ||| |||||||| Sbjct 256 GACAGGGTACGCCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGC 197 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | ||| | ||| ||| || || |||| ||| Sbjct 196 GGGATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCA 137 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || || || ||||| || ||||| || || || |||||| Sbjct 136 ACCTCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCATT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898779621044160