Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq34430 134 2e-26 seq6476 129 9e-25 seq34431 118 2e-21 seq8374 102 1e-16 seq6559 100 4e-16 seq24285 86.0 9e-12 >seq34430 Length=319 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || ||||| || || | ||||| |||| ||| Sbjct 82 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 141 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| || || ||||| ||||||||||| || ||||| || Sbjct 142 GACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 201 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| |||||| ||||| ||||||||| ||| ||| | ||||||||||| Sbjct 202 CAGCGTTTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAAC 261 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | ||||| ||||| || Sbjct 262 ATCCAGAAAGAGTCTACGCTCCATTTGGT 290 >seq6476 Length=10381176 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||| || || | ||||| |||| ||| Sbjct 5656906 ATGCAAATCTTTGTGAAAACTCTCACTGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 5656965 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || ||||| ||||||||||| || || || || Sbjct 5656966 GACACAATCGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGGATCAG 5657025 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||||| |||||| ||||| ||||||||| ||| ||| | ||||||||||| Sbjct 5657026 CAGCGTCTGATTTTTGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGATTATAAC 5657085 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | ||||| ||||| || Sbjct 5657086 ATCCAGAAAGAGTCTACGCTCCATTTGGT 5657114 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | ||||||||||| || || | || || |||| |||| Sbjct 5656678 ATGCAAATCTTCGTGAAAACTCTTACTGGAAAAACCATCACCCTCGAGGTGGAAGCTTCT 5656737 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || || || |||||||| || |||||||| ||| Sbjct 5656738 GACACTATAGAGAATGTCAAAGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAA 5656797 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || ||||| || || ||| ||||||| | || ||||| || Sbjct 5656798 CAACGTTTGATCTTTGCTGGCAAGCAACTAGAGGATGGCAGAACTCTTTCTGATTACAAC 5656857 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || || | ||||||||| Sbjct 5656858 ATCCAGAAGGAATCTACGCTTCAT 5656881 >seq34431 Length=440 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || ||||| || || | ||||| |||| || Sbjct 202 AATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACCATCACTCTCGAAGTTGAAGCCTC 261 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| ||| || || ||||| ||||||||||| || || || || Sbjct 262 TGACACAATTGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGGATCA 321 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||||| || || ||||| ||||||||| |||||| | || || ||||| Sbjct 322 ACAGCGTTTGATTTTCGCTGGCAAGCAACTCGAAGATGGTAGAACTCTTTCCGACTATAA 381 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | ||||| ||||| || Sbjct 382 CATCCAAAAAGAGTCTACGCTCCATTTGGT 411 Score = 102 bits (112), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 || ||||| || || | ||||| |||| ||||| | || ||||| ||| || Sbjct 2 GGCAAAACCATCACCCTCGAAGTTGAAGCATCTGACACAATCGAGAACGTAAAAGCCAAG 61 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || ||||| ||||||||||| || || || ||||| | |||||| |||||| ||||| Sbjct 62 ATCCAAGACAAAGAAGGCATTCCCCCGGATCAACAGCGTCTGATTTTTGCCGGCAAGCAA 121 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAG 156012 ||||||||| ||| ||| | ||||||||||| || || |||| Sbjct 122 CTCGAAGATGGCAGGACTCTTTCAGATTATAACAT-TCAAAAG 163 >seq8374 Length=807232 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||| | || |||||||| || || | |||||||||||| |||||||| || Sbjct 791837 TTTTCTTTCGGATTGGAAATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGGATA 791778 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG-GATATTGAATCTCGCT 18528 |||| || || || ||||| | || || | | || || | ||| || | | || Sbjct 791777 TTTTCTATGGCAATTTGAAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACT-TCCTG 791719 Query 18529 ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAA 18588 | |||||||| | ||||| |||||||| |||||||||| || |||||||||||||| Sbjct 791718 ACTGAATCTTTCAATTAAATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAA 791659 Query 18589 AACAT 18593 |||| Sbjct 791658 GACAT 791654 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 |||| |||| || || | |||||| ||||| || | || ||||| | || | ||| | Sbjct 792213 CTTCGTCTCGCGAGATAAGTTCGTTGCTAAAGGTGAGACCTGGCATGACTCCACGTTTCT 792154 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACG 18299 | |||||||| |||| ||||||||| | |||||||||||||| || |||||||| Sbjct 792153 TCAGCCAAAAAATCGCTGCGAAACTGCCGCTGAAGAATATACCCTCGACCGCCGCGAACG 792094 Query 18300 CTATTAATCTTTCAGCAAA 18318 | |||| | ||||| ||| Sbjct 792093 CGATTATACGTTCAGGAAA 792075 >seq6559 Length=1815223 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||| ||||| ||||| ||||| || || || ||||||| ||| Sbjct 1624427 AATGCAGATCTTCGTTAAAACTTTGACAGGAAAGACTATCACTTTGGAGGTCGAAGCTTC 1624486 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || ||| || || || |||||||||||||| || || || || Sbjct 1624487 GGACACGATTGAGAATGTCAAAGCGAAGATTCAGGATAAAGAAGGCATCCCGCCTGATCA 1624546 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | || || ||||||||||| || | || || ||||| || || Sbjct 1624547 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGGCGCACCTTGTCAGACTACAA 1624606 Query 156002 TAT 156004 ||| Sbjct 1624607 TAT 1624609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||| |||| ||||| || || || || || || |||| ||| Sbjct 1624655 AATGCAGATCTTCGTTAAAACCCTGACAGGAAAGACCATCACTTTGGAGGTTGAAGCTTC 1624714 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||||| || || ||||||||||| || || || || Sbjct 1624715 GGACACAATCGAGAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCGGACCA 1624774 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| |||||||| | |||||| || |||||||| ||| Sbjct 1624775 ACAGAGATTGATCTTTGCCGGAAAACAGCTCGAGGAT 1624811 >seq24285 Length=372 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||| |||| ||||| || || || || || || |||| ||| Sbjct 86 AATGCAGATCTTCGTTAAAACCCTGACAGGAAAGACCATCACTTTGGAGGTTGAAGCTTC 145 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || ||| || || || |||||||||||||| || || || || Sbjct 146 GGACACGATTGAGAATGTCAAAGCGAAGATTCAGGATAAAGAAGGCATCCCGCCTGATCA 205 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | || || ||||||||||| ||| Sbjct 206 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGAT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731160364260800