Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_022323.1 Length=136910 Score E Sequences producing significant alignments: (Bits) Value seq1998 129 5e-25 seq1985 118 9e-22 >seq1998 Length=468 Score = 129 bits (142), Expect = 5e-25 Identities = 282/419 (67%), Gaps = 9/419 (2%) Strand=Plus/Plus Query 56581 TTATCGTTACCGAGGTTAATAAAGCCAGCACCGAAACGGTCAAGAATCGCCTTCTTACGG 56640 || || ||||| | ||| ||||||||||| ||||| ||||| | || | ||||||||| Sbjct 11 TTGTCATTACCTACGTTCATAAAGCCAGCGCCGAAGCGGTCCAAGATAGACTTCTTACGT 70 Query 56641 GCATCGATCAAATCTTTAGTGGAATATTGCTTACCCATACCGTCAACCCCCTTCAGGGTC 56700 || ||| | || |||| ||| |||||||| ||| || | || || || ||| Sbjct 71 TCACTGATTAGGGCTGAAGTGCTATACTGCTTACCGGAACCTTCGATACCTTTAAGTGTC 130 Query 56701 ATGGAGTAAAGCTCTTTACCAGACTTATC--TC-TATCAGACGGAAGTATAAAGAAACTT 56757 |||||| || ||| | || || || |||| ||||| | || ||||| Sbjct 131 ATGGAG-AATGCT-----GGGGCGTTTTCCTTCATATCTGACGGCAACATGAAGAAGGCC 184 Query 56758 TGCTCACCACTATGGGCGTTTGCTGCGTCAAGCATAAGGTCTGCAACCATTCTCCCTTCC 56817 |||||||| |||||||| || || || |||| | || |||||||| |||| Sbjct 185 TGCTCACCTGCGTGGGCGTTAGCCGCATCCTGCATCAATCCTTCAACCATTTCAGCTTCT 244 Query 56818 ATTGAATTCGGGTCAATACTGGCCTTGTTCAAAATATTGGAAGGAATTTTCAGCTCAAGC 56877 |||| ||| || |||||||| | ||| |||||||||| || ||||||| Sbjct 245 GGGCTATTCTTGTCGATTGCTGCCTTGTTAAGGATACTGGAAGGAATCTTAAGCTCAATG 304 Query 56878 ACCCCACCAAGGTCTTTGGAACAGCCAACAACCTCAAGGTTTTCAATCAGAACTTTCTCA 56937 | ||| || ||||| || | || | || || | ||| ||||| ||||| || || Sbjct 305 ATCCCGCCGAGGTCCTTAGTTGCCCCGATGACTTCCAAGTTCTCAATAAGAACCTTTTCT 364 Query 56938 CGGAAAGATCTGTAGCAACCTATCATCGGTGACACACCTGCAGGGTTAGATTCTGTTCC 56996 ||||||| | ||| ||||| | | ||||| ||||| |||||| || || || || Sbjct 365 CGGAAAGCGCGGTAACAACCAACTAGAGGTGAAACACCCATAGGGTTTGAGTCAGTACC 423 >seq1985 Length=318 Score = 118 bits (130), Expect = 9e-22 Identities = 198/286 (69%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 48800 GCACGTTTAGGAACTGTGATGATCGGGTCGTAGAACACATTGTTGTCTTCGTCAAAACCT 48859 || ||||| |||| |||||||| ||||||||||| || ||||| || || ||| | || Sbjct 34 GCTCGTTTTGGAATGGTGATGATTGGGTCGTAGAAGACCTTGTTTTCCTCATCATATCCG 93 Query 48860 GTCAGGATCGCGCCATTCTTAATGCCAGTATTGATCGGGTTGTTCATCAGAACAGACTTG 48919 || | ||| | ||||| ||| || || || || | ||||| | |||| | Sbjct 94 GTTAAGATGGAACCATTACGAATACCTACGTTAATAGGATCGTTCAGGATCACAGTGCTC 153 Query 48920 ATAACCGGAAGATCATCATCAGACATCTTCATGCTTAAACCCATATTAGAGCGACGATGC 48979 | || | ||||| || |||||||||| | |||||| || ||||| | ||| Sbjct 154 AGGTTTGGCAAGTCATCGTCGCTCATCTTCATGGACATACCCATGTTTGAGCGCTGGTGC 213 Query 48980 ATGTACCCAAACATGGATTCTTCAGATCTGAACTTGATCCAGTGTGCAAAACGAATAGCG 49039 ||||| || | || ||||| | |||||| | |||||| | || || ||| || Sbjct 214 ATGTAGGAGAATACTGACTCTTCCATACGGAACTTCAACCAGTGGGANAAGCGGATAACG 273 Query 49040 TCTGCATACTGACCTGAAGCACACTTGCCTTCCCAGAAAGCGCCAA 49085 || |||||| |||| |||| ||| || || |||||||| ||||||| Sbjct 274 TCAGCATACNGACCAGAAGAACATTTACC-TCCCAGAATGCGCCAA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437558126257600