Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_022772.1 Length=156338 Score E Sequences producing significant alignments: (Bits) Value seq2061 325 4e-84 seq2042 178 1e-39 >seq2061 Length=505 Score = 325 bits (360), Expect = 4e-84 Identities = 337/439 (77%), Gaps = 2/439 (0%) Strand=Plus/Minus Query 52400 AACCAGATTAACAGCATCGTGACCTTCTCCAATGAAGGTATCGTGTTGTATGGTGACAAA 52459 |||||||| ||||||||||| |||||| ||| |||||| ||||||||||| ||||||||| Sbjct 474 AACCAGATCAACAGCATCGTTACCTTCACCACTGAAGGCATCGTGTTGTACGGTGACAAA 415 Query 52460 ACTGGTCTGACTCGTCCGTCTGCTTTCGATCGTATCAATGTTCGCGGTCTGTTTATTATG 52519 || || ||||| || || ||| ||||| || ||||| || || ||| ||||| ||| Sbjct 414 ACCGGCCTGACCCGCCCAAGTGCGTTCGACCGCATCAACGTCCGTGGTACTTTTATCATG 355 Query 52520 GCAGAACAGAACATCGCTGCAATCGCCAAATATTACCTTGGTGAGAACAATGATGCGTTC 52579 || || |||||| |||| || || ||||| ||||| || ||||| || |||||||| Sbjct 354 GCTGAGACCAACATCTCTGCCATTGCTAAATACTACCTGGGCGAGAATAACGATGCGTTT 295 Query 52580 ACTCGC-AGTCTGTTCAGCAACGCTGTTCGTCCTTATATTCGCCAGCTGGCAAATATGGG 52638 || ||| ||| |||||| |||||| || || ||| ||||||||||| ||||| Sbjct 294 ACGCGCCAGT-TGTTCACCAACGCGGTCACCCCATATGTTCGCCAGCTGATCGGCATGGG 236 Query 52639 TGCGATCTACGATGGTAAAGTCAAGTGTGACGAAGATAACAACACTGCTGACGTCATCGC 52698 ||| ||| ||||||||| ||||| ||||||||||| |||||| | ||| || | || Sbjct 235 TGCAATCGTCGATGGTAAGGTCAAATGTGACGAAGACAACAACCCGGCTTCGGTTGTAGC 176 Query 52699 GGCAAATCAGATGGTCGCTGGTATCTGGCTGAAACCGGAATACAGCATCAATTGGGTGTA 52758 || || || ||| |||| ||||||||||||||||| |||||||||||||| ||| | || Sbjct 175 CGCCAACCAAATGATCGCAGGTATCTGGCTGAAACCAGAATACAGCATCAACTGGATCTA 116 Query 52759 TCTTGACTTTGCTGCAGTTCGTCCGGATATGGAGTTCTCTGAAATTGAATCCGGCGGCGG 52818 || || || || || || |||||||| || | |||||| ||| | ||| ||| || Sbjct 115 CCTCGATTTCGCAGCCGTCCGTCCGGACATTGCGTTCTCCGAAGTGGAAGGTGGCATGGG 56 Query 52819 CATCGTTGCTGCTTCTTAA 52837 |||||| || || || ||| Sbjct 55 CATCGTGGCCGCGTCATAA 37 >seq2042 Length=482 Score = 178 bits (196), Expect = 1e-39 Identities = 217/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 54851 GAGAAACGCGCATTCTATCTTGACGTCGGTACTCTCGGTAAGAAATCTGCTGAAGAATAC 54910 ||||| ||||||||||| ||||||||||||| | ||||||||||| |||||||| || Sbjct 482 GAGAAGCGCGCATTCTACCTTGACGTCGGTATGTTGGGTAAGAAATCCGCTGAAGAGTAT 423 Query 54911 ATGACCATGATGATGGGTAAATTCAAAAACCGCAACGCATATGACCGCACCACTGGTAAG 54970 ||| ||||||||||||| || || || ||| | ||||| |||| || || ||| Sbjct 422 ATGGCCATGATGATGGGCAAGTTTAAGAACAACCTGTCATATAACCGTCAGACCGGCAAG 363 Query 54971 ATAACAGGTAATGCCCATCTTATGGGTATTGCAGAGGATTATTGGTTGCCGCGCCGCGAA 55030 || ||| | | || || |||||||| || ||||| || ||| |||| || || || Sbjct 362 GTACAAGGCGACACTCACCTCATGGGTATCGCTGAGGACTACTGGATGCCACGTCGTGAG 303 Query 55031 GGTCAGAATGCTACAGAGATCGCGACTGTTGGTGGTGGGAATCAATTGGGCGAAATGGAT 55090 || ||||| || || || || || | ||||| || | || ||||| |||||||| Sbjct 302 GGACAGAACGCGACCGAAATAAGCACCATCGGTGGCGGTGACCAGCTGGGCCAAATGGAT 243 Query 55091 CACGTGAACTATTTCCGTGAAAAACTCTATGATGCTCTAATGATCCCTAAGAGCCG 55146 || ||||| || ||||| || || || | |||||| | ||| ||||||||||| Sbjct 242 CATGTGAATTACTTCCGCAGCAAGCTGTACGGTGCTCTCAAGATTCCTAAGAGCCG 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499667275647040