Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_022968.1 Length=148567 Score E Sequences producing significant alignments: (Bits) Value seq1998 219 4e-52 seq1985 158 1e-33 seq43336 154 1e-32 >seq1998 Length=468 Score = 219 bits (242), Expect = 4e-52 Identities = 306/426 (72%), Gaps = 5/426 (1%) Strand=Plus/Plus Query 55238 TCGTTACCAAGGTTGATGAAACCAGCACCAAAACGGTCAAGGATCGCCTTTTTACGTGAG 55297 || ||||| | ||| || || ||||| || || ||||| | ||| | ||| |||||| Sbjct 14 TCATTACCTACGTTCATAAAGCCAGCGCCGAAGCGGTCCAAGATAGACTTCTTACGTTCA 73 Query 55298 TTCACCAGTTCTTGTGTGCTATACTGCTTACCAGCACCGTCAATGCCCTTCAGAGCCATC 55357 | | || || ||||||||||||||||| | ||| || || || || || | ||| Sbjct 74 CTGATTAGGGCTGAAGTGCTATACTGCTTACCGGAACCTTCGATACCTTTAAGTGTCATG 133 Query 55358 TTGTACTGTTCACCACCCTGAGCGTTCATATCTGAAGGTAGGATGAAGTAAGCTTGCTCA 55417 | | | | | | | ||||||||||| || | |||||| | || |||||| Sbjct 134 GAGAA---TGCTGGGGCGTTTTCCTTCATATCTGACGGCAACATGAAGAAGGCCTGCTCA 190 Query 55418 CCTGCGTGTGCGTTTGCAGCGTCAGCCATTAATCCTTGAACCATATCGGCTTCTGGGGAT 55477 |||||||| ||||| || || || ||| ||||||| |||||| || ||||||||| Sbjct 191 CCTGCGTGGGCGTTAGCCGCATCCTGCATCAATCCTTCAACCATTTCAGCTTCTGGGCTA 250 Query 55478 TTAGGGTCCATTGCTGCTTTGTTCAGAAT-CTGAGAAGGGATCTTAAGTTCAATGATACC 55536 || ||| |||||||| ||||| || || ||| ||||| |||||||| |||||||| || Sbjct 251 TTCTTGTCGATTGCTGCCTTGTTAAGGATACTG-GAAGGAATCTTAAGCTCAATGATCCC 309 Query 55537 ACCAAGGTCTTTAGATGCCCCGATAGTCTCAAGGTTTTCAATCAAGATCTTCTCACGGAA 55596 || ||||| |||| ||||||||| || | ||| ||||| | | ||| || ||||| Sbjct 310 GCCGAGGTCCTTAGTTGCCCCGATGACTTCCAAGTTCTCAATAAGAACCTTTTCTCGGAA 369 Query 55597 GGCACGATAACATCCAACCAAAGGAGATACACCCGCCGGGTTGGATTCTGTACCACCCAG 55656 || || ||||| ||||| | ||| || |||||| ||||| || || |||||||| | Sbjct 370 AGCGCGGTAACAACCAACTAGAGGTGAAACACCCATAGGGTTTGAGTCAGTACCACCAAA 429 Query 55657 ACTCAT 55662 ||||| Sbjct 430 GCTCAT 435 >seq1985 Length=318 Score = 158 bits (174), Expect = 1e-33 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 43362 GGGATAGTGATCACCGGATCGTAGAACACTTTGTTAACGTCATCGTATCCGGTCAGGATA 43421 || || ||||| | || |||||||| || ||||| | ||||| |||||||| | ||| Sbjct 43 GGAATGGTGATGATTGGGTCGTAGAAGACCTTGTTTTCCTCATCATATCCGGTTAAGATG 102 Query 43422 GAACCGTTAGCGATACCTACGTTGATAGGGTTGTTCAGCATCACAGACTTCAGGTTTGGC 43481 ||||| ||| ||||||||||| ||||| | |||||| ||||||| ||||||||||| Sbjct 103 GAACCATTACGAATACCTACGTTAATAGGATCGTTCAGGATCACAGTGCTCAGGTTTGGC 162 Query 43482 AGATCGTCATCACTCATCTTCATGGACAGGCCCTGATTAGAACGACGAGACATGTAGCCG 43541 | || || || |||||||||||||||| ||| || || || | ||||||| | Sbjct 163 AAGTCATCGTCGCTCATCTTCATGGACATACCCATGTTTGAGCGCTGGTGCATGTAGGAG 222 Query 43542 AACACGCTTTCTTCTGTGCGGAATTTCAGCCAGTGACCGAAACGAACAACGTCAACATAG 43601 || || ||||| | ||||| |||| |||||| || || | ||||||| |||| Sbjct 223 AATACTGACTCTTCCATACGGAACTTCAACCAGTGGGANAAGCGGATAACGTCAGCATAC 282 Query 43602 TTGCCGGAAGCACATTTGCCT 43622 || |||| |||||| ||| Sbjct 283 NGACCAGAAGAACATTTACCT 303 >seq43336 Length=1079 Score = 154 bits (170), Expect = 1e-32 Identities = 305/445 (69%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 57374 GGGTTACAAGAGATAACCATGCGGCTTGGGTATTTGGATTCAGAACGAAGACGAGACATA 57433 |||||||| || |||||||| ||| |||||||| || ||||| | ||||||||| Sbjct 1078 GGGTTACATGACATAACCATTCGGGACGGGTATTTAGAAGATGAACGCAAACGAGACATC 1019 Query 57434 AGGTATTCGATCTGAGACCATTCAAACTGTGTTCCTTCGTCAAAACCGACAAAGGTATAT 57493 | |||||||| ||| |||||||||||| || ||||||| | || | ||| ||| || Sbjct 1018 ATGTATTCGAGCTGTTCCCATTCAAACTGGGTGGCTTCGTCTACGCCTATAAAAGTAAAT 959 Query 57494 TGCAGACCCTGG-TGAGAATACTTATCTTTCTCATATTCCATGTGGGACCACTTAACTTT 57552 | || ||||| || || | ||||| | | | ||| |||||||||||| Sbjct 958 TCTAGGCCCTGAATGTCAAGCTTGTTCTTTA-CGTGCTGCATCGACTGCCACTTAACTTT 900 Query 57553 AGCACCGGAAGGGAAAATTGCCTCTAGGTCTTTCTCCCTGAAGCGTGGCTTCCATTCAGG 57612 ||| ||| ||||| | || || | || ||||| | || ||||| || | | Sbjct 899 AGCCCCGTTTGGGAATAAAGCTTCCATCTCATTCTCACGAAATCGTGGTTTAGAGTTGAC 840 Query 57613 AGCAAGCTGTGTGTAAATGCCTCGTGCAGTATCATACAGACCACC---ACCACCTTTCAA 57669 | | || || | ||||| || || | ||| |||||||||| ||||| | | Sbjct 839 ATCGAGTTGGTTATAAATATCTTTAGCCTTGTCAAACAGACCACCTTGACCACGT---AG 783 Query 57670 CTGAGGTGTGTTTCTACGGAACATAATACAGTTCGTTCTTGGGTCGTCGATAATGTTGAG 57729 ||| ||| || |||||||| | |||| |||| |||||||| ||||| || Sbjct 782 CTGTGGTACTGATCGGCGGAACATGACACAGGCTGTTCGCGGGTCGTCAATAATAAACAG 723 Query 57730 GGGCATTAATTGAAGCAGGTAAGATTTACCTGACCCCGCCGCACCCCCAATGATCAGGAT 57789 |||||||| |||||||| || || || ||||| || || ||||| || ||||| || || Sbjct 722 AGGCATTAACTGAAGCAGATAGGACTTCCCTGAACCAGCAGCACCGCCGATGATTAGAAT 663 Query 57790 TTGTGCGT-TGTTTTCCAGGATCAT 57813 | |||| || ||| |||||||| Sbjct 662 CTCAGCGTCTGATTT-AAGGATCAT 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474824255268960