Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_024134.1 Length=139020 Score E Sequences producing significant alignments: (Bits) Value seq1998 132 4e-26 seq1985 131 1e-25 >seq1998 Length=468 Score = 132 bits (146), Expect = 4e-26 Identities = 285/420 (68%), Gaps = 11/420 (3%) Strand=Plus/Plus Query 58057 TTATCGTTACCGAGGTTAATAAAGCCAGCACCGAAACGGTCAAGAATCGCCTTCTTACGG 58116 || || ||||| | ||| ||||||||||| ||||| ||||| | || | ||||||||| Sbjct 11 TTGTCATTACCTACGTTCATAAAGCCAGCGCCGAAGCGGTCCAAGATAGACTTCTTACGT 70 Query 58117 GCATCAATCAAATCTTTAGTGGAATACTGCTTACCCATACCGTCAACCCCCTTCAGGGTC 58176 || || | || |||| |||||||||||| ||| || | || || || ||| Sbjct 71 TCACTGATTAGGGCTGAAGTGCTATACTGCTTACCGGAACCTTCGATACCTTTAAGTGTC 130 Query 58177 ATGGAGTAAAGCTCTTTACCAGACTTATC--TC-TATCAGACGGAAGTATAAAGAAACTT 58233 |||||| || ||| | || || || |||| ||||| | || ||||| Sbjct 131 ATGGAG-AATGCT-----GGGGCGTTTTCCTTCATATCTGACGGCAACATGAAGAAGGCC 184 Query 58234 TGCTCACCACTATGGGCGTTTGCTGCGTCAAGCATAAGGTCTGCAACCATTCTCCCTTCC 58293 |||||||| |||||||| || || || |||| | || |||||||| |||| Sbjct 185 TGCTCACCTGCGTGGGCGTTAGCCGCATCCTGCATCAATCCTTCAACCATTTCAGCTTCT 244 Query 58294 ATTGAATTCGGGTC-AATGCTGGCCTTGTTCAAAATATTGGAAGGAATTTTCAGCTCAAG 58352 |||| ||| | |||| |||||||| | ||| |||||||||| || ||||||| Sbjct 245 GGGCTATTCTTGTCGATTGCT-GCCTTGTTAAGGATACTGGAAGGAATCTTAAGCTCAAT 303 Query 58353 CACACCACCAAGGTCTTTGGAACAGCCAACAACCTCAAGGTTTTCAATCAGAACTTTCTC 58412 | || || ||||| || | || | || || | ||| ||||| ||||| || || Sbjct 304 GATCCCGCCGAGGTCCTTAGTTGCCCCGATGACTTCCAAGTTCTCAATAAGAACCTTTTC 363 Query 58413 ACGGAAAGATCTGTAGCAACCTATCATAGGTGACACACCTGCAGGGTTAGATTCTGTTCC 58472 ||||||| | ||| ||||| | | |||||| ||||| |||||| || || || || Sbjct 364 TCGGAAAGCGCGGTAACAACCAACTAGAGGTGAAACACCCATAGGGTTTGAGTCAGTACC 423 >seq1985 Length=318 Score = 131 bits (144), Expect = 1e-25 Identities = 201/286 (70%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 50277 GCACGTTTAGGAACTGTGATGATCGGGTCGTAGAACACATTGTTGTCTTCGTCAAAACCT 50336 || ||||| |||| |||||||| ||||||||||| || ||||| || || ||| | || Sbjct 34 GCTCGTTTTGGAATGGTGATGATTGGGTCGTAGAAGACCTTGTTTTCCTCATCATATCCG 93 Query 50337 GTCAGGATCGCACCATTCTTAATGCCAGTGTTGATTGGGTTGTTCATCAGGACAGACTTG 50396 || | ||| | |||||| ||| || ||| || || | ||||| | |||| | Sbjct 94 GTTAAGATGGAACCATTACGAATACCTACGTTAATAGGATCGTTCAGGATCACAGTGCTC 153 Query 50397 ATAACCGGAAGATCATCATCAGACATCTTCATGCTTAAACCCATGTTGGAGCGACGATGC 50456 | || | ||||| || |||||||||| | ||||||||| ||||| | ||| Sbjct 154 AGGTTTGGCAAGTCATCGTCGCTCATCTTCATGGACATACCCATGTTTGAGCGCTGGTGC 213 Query 50457 ATGTACCCAAACATAGATTCTTCAGATCTGAACTTGATCCAGTGTGCAAAACGAATAGCG 50516 ||||| || | || ||||| | |||||| | |||||| | || || ||| || Sbjct 214 ATGTAGGAGAATACTGACTCTTCCATACGGAACTTCAACCAGTGGGANAAGCGGATAACG 273 Query 50517 TCTGCATACTGACCTGAAGCACACTTACCTTCCCAGAAAGCACCAA 50562 || |||||| |||| |||| ||| ||||| |||||||| || |||| Sbjct 274 TCAGCATACNGACCAGAAGAACATTTACC-TCCCAGAATGCGCCAA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444303560950400