Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq43336 318 6e-82 seq1998 221 1e-52 seq1985 196 5e-45 seq37382 111 2e-19 seq1991 107 2e-18 seq37313 96.9 3e-15 seq39135 91.5 1e-13 >seq43336 Length=1079 Score = 318 bits (352), Expect = 6e-82 Identities = 358/476 (75%), Gaps = 6/476 (1%) Strand=Plus/Plus Query 7 GCTACATTCGCACCCGCGAGTCGTAAGCAACAGATGGTTCTCGAATCCAAAGCACAGATC 66 || || ||||| ||||| ||| ||| ||||||||| | || |||| | || |||| Sbjct 606 GCCACGTTCGCTCCCGCCAGTATTAAACAACAGATGATCCTTAAATCAGACGCTGAGATT 665 Query 67 CTCGTAATGGGGGGCGCAGCAGGCTCAGGTAAATCATACCTGCTCCAGTTGATGCCTCTG 126 || | || || || || || || ||||| || || || ||||| ||||| ||||||||| Sbjct 666 CTAATCATCGGCGGTGCTGCTGGTTCAGGGAAGTCCTATCTGCTTCAGTTAATGCCTCTG 725 Query 127 CTGATCATCGACGATCCCCGTACAGCTTGTATCATGTTCCGCCGTACAGTGCCTCAGATT 186 | || || ||||| || || ||||| ||| ||||||||||||| |||| || ||| | Sbjct 726 TTTATTATTGACGACCCGCGAACAGCCTGTGTCATGTTCCGCCGATCAGTACCACAGCTA 785 Query 187 CGTGGTCAGGGCGGTCTGTTCGACAAAGCGAAAGATATTTACAACCAGCTTCCCCCGGTC 246 |||||||| || |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 786 CGTGGTCAAGGTGGTCTGTTTGACAAGGCTAAAGATATTTATAACCAACT---CGATGTC 842 Query 247 G--TCAAGCCCAAG-TTCAAAGAGAACGAGATGATTGCGACATTCCCCAATGGGGCGACG 303 || | ||| | || ||||| |||||| || |||||| || ||||| | Sbjct 843 AACTCTAAACCACGATTTCGTGAGAATGAGATGGAAGCTTTATTCCCAAACGGGGCTAAA 902 Query 304 GTGAAGTGGCAGTCCATGCAGCACACCAACGACAAGTACAACATCCAAGGTCTGGAATTT 363 || ||||||||||| ||||||||| || ||||| |||| || || || |||||| Sbjct 903 GTTAAGTGGCAGTCGATGCAGCACGTAAAGAACAAGCTTGACATTCAGGGCCTAGAATTT 962 Query 364 ACTTTCATCGGTGTGGACGAAGGAACCCAGTTTGAATGGGAACAGCTTGAGTACATGATG 423 ||||| || || || ||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 963 ACTTTTATAGGCGTAGACGAAGCCACCCAGTTTGAATGGGAACAGCTCGAATACATGATG 1022 Query 424 TCGCGTTTGCGTTCAAACTCAAAGTATCCTTCCCGCATGGTTATCTCTTGTAACCC 479 || |||||||||||| || || || || ||||| |||||||| || |||||||| Sbjct 1023 TCTCGTTTGCGTTCATCTTCTAAATACCCGTCCCGAATGGTTATGTCATGTAACCC 1078 >seq1998 Length=468 Score = 221 bits (244), Expect = 1e-52 Identities = 292/403 (72%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 2191 GGTGTTTCTCCGCTGGTAGGCTGCTACCGTGCATGGCGTGAGAAAATCCTCATTGAGAAC 2250 |||||||| || || || || || ||||| || | || || || | || ||||||||| Sbjct 402 GGTGTTTCACCTCTAGTTGGTTGTTACCGCGCTTTCCGAGAAAAGGTTCTTATTGAGAAC 343 Query 2251 TTGGAAGTTGTTGGTGCAACAAAGGACATGGGTGGTGTGATCGAATTGAAGATCCCCTCC 2310 |||||||| | || ||||| |||||| | || || | || || | ||||| || ||| Sbjct 342 TTGGAAGTCATCGGGGCAACTAAGGACCTCGGCGGGATCATTGAGCTTAAGATTCCTTCC 283 Query 2311 CAGATCCTGAACAAGGCTGCAATGGACCCTTCTTCTCCGGAAGCGGATATGGTGCGTGGC 2370 ||||| |||||||| ||||| ||| | || ||||| || ||||| || Sbjct 282 AGTATCCTTAACAAGGCAGCAATCGACAAGAATAGCCCAGAAGCTGAAATGGTTGAAGGA 223 Query 2371 TTGATGTCCGATGCTGCAAACGCCCACTCTGGCGAGCAATCATTCTTCATGCTGCCTTCT 2430 |||||| ||||| || ||||||||| | || ||||| | ||||||||| |||| || Sbjct 222 TTGATGCAGGATGCGGCTAACGCCCACGCAGGTGAGCAGGCCTTCTTCATGTTGCCGTCA 163 Query 2431 GACACCAAGGACAACGCCCCTCAGTATTC--CATGACCCTGAAAGGGATCGATGGGATGG 2488 || | ||||| |||||||| || |||| |||||| || ||||| ||||| || | Sbjct 162 GATATGAAGGAAAACGCCCC--AGCATTCTCCATGACACTTAAAGGTATCGAAGGTTCCG 105 Query 2489 GCAAGCAGTACAGTACCGCACAGTTGATTAGCGACCGTAAGAAGTCAATCCTTGATCGAC 2548 | |||||||| || || || | || || || ||||||||||| ||| | || || Sbjct 104 GTAAGCAGTATAGCACTTCAGCCCTAATCAGTGAACGTAAGAAGTCTATCTTGGACCGCT 45 Query 2549 TCGGTGCAGGCTTCATCAACGTAGGTAACGACAAAGGCGGATC 2591 |||| || ||||| || ||||||||||| ||||||||||| || Sbjct 44 TCGGCGCTGGCTTTATGAACGTAGGTAATGACAAAGGCGGTTC 2 >seq1985 Length=318 Score = 196 bits (216), Expect = 5e-45 Identities = 205/270 (76%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16140 AGGTAAAACTTCTTCTGGGCAGTACGTTGACGTGATTCGCTTCTCCCACTGGGTTAAATT 16199 ||||||| ||||||||| | ||| | |||||| || ||||| ||||||||| | || || Sbjct 303 AGGTAAATGTTCTTCTGGTCNGTATGCTGACGTTATCCGCTTNTCCCACTGGTTGAAGTT 244 Query 16200 CCGTATGGAAGAATCCGTGTTCGCGTACATGAAGCGCCGTTCTGACATGGGTCTGTCCAT 16259 |||||||||||| || || ||| | |||||| | | || || |||||||| ||||||| Sbjct 243 CCGTATGGAAGAGTCAGTATTCTCCTACATGCACCAGCGCTCAAACATGGGTATGTCCAT 184 Query 16260 GAAGATGAGCGACGAAGACCTGCCTGTACTGAAGTCTGTTCTGATGAACAACCCGATCAA 16319 ||||||||||||||| ||| |||| |||| |||| | ||||| | || || || Sbjct 183 GAAGATGAGCGACGATGACTTGCCAAACCTGAGCACTGTGATCCTGAACGATCCTATTAA 124 Query 16320 CATCGGTATTCGTAATGGTGGTATTCTGACTGGCTACGACGCTGAAAACAAAGTGTCCTA 16379 | | ||||||||||||||| || | || || || || | |||||||| || | ||| Sbjct 123 CGTAGGTATTCGTAATGGTTCCATCTTAACCGGATATGATGAGGAAAACAAGGTCTTCTA 64 Query 16380 CGACCCGACGATCACTATTCCGAAACGCGC 16409 |||||| | ||||| ||||| ||||| || Sbjct 63 CGACCCAATCATCACCATTCCAAAACGAGC 34 >seq37382 Length=576 Score = 111 bits (122), Expect = 2e-19 Identities = 345/522 (66%), Gaps = 14/522 (3%) Strand=Plus/Minus Query 57005 ACCCATCTTAACCCCGGCACCGACGAACATACCTTCCCCGAGACGACGGCCCAACGTCAG 57064 |||||| || || || ||||| | ||| ||| || |||| ||| ||||||| ||| Sbjct 517 ACCCATTTTTACACCAGCACCAATGAAGTAACCCTCACCGATACGTCGGCCCAGAGTCTT 458 Query 57065 GCGCGTCATTGTAGGCCAAGGCCA-TTTCTTCCCGAGTTTAGGGATCTCGTGTGCCTTCT 57123 ||||| |||||||||||||| | ||| || ||||||||| || || || Sbjct 457 CTTGGTCATGGTAGGCCAAGGCCACGGACGGCCCAAG-ACAGGGATCTCTTGAGCTTTAG 399 Query 57124 CACGGAACTGAGAGTAGG-TCGCAAAGCCGTCCGGCACGTACTCTTTCGGCTTCATCGCT 57182 ||||| ||| |||| ||| ||| ||||| || | |||||| | || ||||| | Sbjct 398 TACGGATCTGCTCATAGGTTCGGAAA-CCGTCAGGGATGTACTCGATAGGTTTCATGATT 340 Query 57183 GCCCAGAAAAGCTGCTGCGCCAAGCCCTTATTGTACATGTCGCAAGGGTCCATGTCTTCA 57242 | |||||| | ||| | |||| || | |||||| || || || ||| | || || Sbjct 339 GACCAGAACAACTGGTTAGCCATACCTTCGCCGTACATATCACACGGATCCTTATCATCT 280 Query 57243 GGGATATCGACGACTTTCATCTGTGGGATGACAGAATACACTGCCGCCACGGCATCTTTG 57302 || | || | || |||||| || || | |||||| || || || ||||| Sbjct 279 GGCAGGTCAGCTACACGCATCTGAGGAATAAGAGAATAAACCTGAGCTGTTGCCTCTTTA 220 Query 57303 CCCTTCATGATACCCTTGGCT--TTCTCAGTTTCGTTCGCCCGGTCGGCGTCGAAAGCCA 57360 || || || ||||||| ||| ||||| | || | ||| || || || ||| || Sbjct 219 CCTTTGATAATACCCT--GCTGCTTCTCCGCATCAGTTGCCTTATCCGCATCAAAA--CA 164 Query 57361 CAAT--GATCTCTTCGAACTTGCTCAGGAGCTTATAGTTGTTCTTCTGAGACAGGTTCTG 57418 |||| ||||| |||| ||| || ||| ||| |||||||| || ||| | Sbjct 163 CAATACGATCTGTTCGTGCTTCTCCACATATTTAAGGTTCTTCTTCTGGCCCAAGTTACG 104 Query 57419 TACTGCGTTGGATGTGCCGTTGGAGATTGACACAACCGTGAAGTTAGGCTTACGGGCATT 57478 || || ||||| ||||||||||| | || | ||||| ||| |||||| | | Sbjct 103 GACAGCATTGGAAGTGCCGTTGGATACGGAGATTACCGTTGGGTTGATCTTACGAGTGCT 44 Query 57479 GCCGTC-CTTCGATTTGTAGTTCTCGCGGAGAACCTGCCACA 57519 || || | || ||| |||||||| || | | ||||||| Sbjct 43 ACCATCACGTC-CTTTATAGTTCTCTCGCATGGCTTGCCACA 3 >seq1991 Length=333 Score = 107 bits (118), Expect = 2e-18 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 120768 GCCACGTTAGGATGGAACAATGTGATGTTCTTACCCTGCTGGAGGCGAGAGTACAGCATT 120827 |||||||| |||||||||| | ||| || || ||| || || |||| || Sbjct 160 GCCACGTTCGGATGGAACAGGGAGATTTTACCTCCAGTCTGAAGACGCTTATACATCAAC 101 Query 120828 TTGTTCAACTGAAGTCCGTAGTCCACATGGCGAGCACGAGTGCTCT-CAGTACCACGGTT 120886 |||||||| || | |||||||| ||||||||| |||| || |||| | || || ||||| Sbjct 100 TTGTTCAATTGCAAGCCGTAGTCAACATGGCGAACACGTGT-CTCTTCTGTTCCTCGGTT 42 Query 120887 GTTCTTCAGCACAATCAGGCTTTCAAAATCCCAGTGCCACA 120927 ||||| || |||||||| |||||||||||||||||||| Sbjct 41 ATTCTTAAGGACAATCAGCTCTTCAAAATCCCAGTGCCACA 1 >seq37313 Length=829 Score = 96.9 bits (106), Expect = 3e-15 Identities = 96/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 18889 TACGGTGTATTTGCCGCAGGTGCAAGTGT-TCTT-CAACAAGGCCAGTTCTTCCAGGGTA 18946 || |||| ||||||||||||| |||| | |||| || || || |||||||| || || Sbjct 711 TATGGTGCATTTGCCGCAGGT--AAGTCTGTCTTACAGCAGGGACAGTTCTTTCAAGGAT 768 Query 18947 TGGATGCAACGATGACGATGGTTTCTGATTCCTCCGAAGAAGCTGCAAAAAGAATCCAGT 19006 |||| || || ||| |||||||||||||||||| |||||||||| || | ||||||| Sbjct 769 TGGAGGCCACAATGTTGATGGTTTCTGATTCCTCAGAAGAAGCTGGTAAGCGTATCCAGT 828 Query 19007 T 19007 | Sbjct 829 T 829 >seq39135 Length=635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 222/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 22787 CGTGGGAAGGTGGTTGGGGTGAACTACAGTGGACCGTCTGTTGATGTTCAACCGATGGCC 22846 ||||| ||||| || || || | ||| ||||| | ||||| |||||||| ||||| Sbjct 462 CGTGGCAAGGTTGTAGGTGTAGATTACTCAGGACCTACGGTTGACGTTCAACCTATGGCT 403 Query 22847 TACACAGAGTTCCCTTCTGGAACCAC---AGACCGATACCCGGTTATTTATGATGTCCCC 22903 | |||| ||| ||||| ||| |||| ||||||| || | | |||| || Sbjct 402 AAGACAG---TCCTTTCTGACGGCACTGAAGACGGATACCCTACCATCTTTAATGTTCCG 346 Query 22904 GTCCTGTTGCCGTCAGGCGCAGGGGGTAAGGCCCGCCTGACCATGCCGATTAAGCCCGGC 22963 || | | ||||||| || || ||||| ||||| ||||||||||| ||| || Sbjct 345 GTACAACTACCGTCAGCTAATGGAGGAAAGGCTCGCCTAACCATGCCGATCAAGGTTGGT 286 Query 22964 GACGTGGTAGGTCTCTCCTTCTCTGAGCGGAACGAGGGGGACAATAACGATCAGAACACT 23023 || |||| || | |||||| ||| | ||||| | || | ||| || | |||| Sbjct 285 GATATGGTTGGCATTAACTTCTCAGAGAGAAACGAAGATAACTCTTCCGACCAAAGCACT 226 Query 23024 CACCAACTGTTTGCCGGGTGGGCCGTCACCCAGATCTTCACCGATGGCAACTCAAAGGCG 23083 || | |||| || || | || ||||| |||||| ||| | ||| | || | Sbjct 225 CATGGATTGTTCGCAGGTTTCGCTGTCACTGAGATCTACACACCAGAAAACGCTAAACCT 166 Query 23084 ATTCATCCAGACAACGTTGTCTTGGAGAACGATAA 23118 || | || || || || ||| | ||||||||||| Sbjct 165 ATCGACCCTGATAAGGTAGTCCTTGAGAACGATAA 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476726403914560