Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq61987 187 5e-42 seq6559 181 2e-40 seq61286 161 2e-34 seq6476 152 1e-31 seq7367 107 4e-18 >seq61987 Length=372 Score = 187 bits (206), Expect = 5e-42 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || |||||| |||| || ||||||||||| || ||||||||||| || | | ||| || Sbjct 76 CAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAGAGCGTGCGACCATC 135 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || ||||||||||| |||||||| | ||||| |||||||| || |||||||||||||| Sbjct 136 CTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGGATTCCTTCCTTATC 195 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||| || ||||| ||||| || ||||| ||| | || |||||||| || || || Sbjct 196 CTGAATTTTGGCTTTGACATTCTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATGGT 255 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| |||||||| || || || || |||||||| Sbjct 256 CTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 288 >seq6559 Length=1815223 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || |||||| |||| || ||||||||||| || ||||||||||| || | | ||| || Sbjct 1625096 CAAAACTAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAGAGCGTGCGACCATC 1625037 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || ||||||||||| |||||||| | ||||| |||||||| || ||||||||||| || Sbjct 1625036 CTCGAGTTGTTTTCCGGCAAAGATCAACCTTTGCTGATCTGGGGGGATTCCTTCCTTGTC 1624977 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 |||||| || ||||| ||||| || ||||| || | || |||||||| || || || Sbjct 1624976 TTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAACGTGATGGT 1624917 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| |||||||| ||||| || || || ||||| Sbjct 1624916 CTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 1624884 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | ||| || || || |||||||| || || |||||||| Sbjct 1626022 CCGCCTCTAAGTCGAAGTACAAGGTGAAGCGTGGACTCTTTCTGAATGTTGTAATCAGAA 1625963 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || ||||| || || ||||||| || || ||||||||||| Sbjct 1625962 AGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATTAACCTCTGCTGATCTGGAGGA 1625903 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || |||||||| || || || || ||||| ||||| ||| | || ||| Sbjct 1625902 ATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCAGACGCCTCAACT 1625843 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| |||||||| || || || || |||||||| Sbjct 1625842 TCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625796 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| || || ||||| ||||| ||||| ||||| || || || || | | ||| Sbjct 1624414 CGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCG 1624355 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || |||||||| ||||| | | || ||||| || || ||||||||||| Sbjct 1624354 TCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGGATTCCTTCCTTG 1624295 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||||||||| || || || || || || || || || ||||| | |||||| Sbjct 1624294 TCCTGAATCTTTGCCTTCACGTTCTCGATGGTGTCGGAAGCCTCAACTTCAAGAGTTATG 1624235 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || ||||||||||| Sbjct 1624234 GTCTTCCCAGTTAACGTCTTCACGAATATCTGCAT 1624200 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || ||| || |||| || |||||||| || || || |||||||| || | | ||||| Sbjct 1625324 CAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAAAGCGTGCGGCCGTC 1625265 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || || ||||| || || ||||| | ||| || |||||||| || |||||||||||||| Sbjct 1625264 CTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATC 1625205 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||| || ||||| || || || ||||| ||| | || || |||| || || || Sbjct 1625204 CTGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAACCTCCAGTGTGATGGT 1625145 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || || || || ||||| Sbjct 1625144 TTTTCCTGTTAAGGTTTTAACGAAAATTTGCAT 1625112 >seq61286 Length=444 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || |||| || ||||||||||| || || |||||||| || | | ||||| || Sbjct 184 ACCAAATGCAACGTGGATTCTTTCTGAATGTTGTAATCAGAAAGCGTGCGGCCGTCCTCG 243 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || ||||| || |||||||| | ||| || |||||||| || |||||||||||||| ||| Sbjct 244 AGCTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGA 303 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || ||||| || || || ||||| ||| | || |||||||| || || ||||| Sbjct 304 ATTTTGGCTTTGACGTTCTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATGGTCTTT 363 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || |||||||| Sbjct 364 CCTGTCAAGGTTTTGACGAAAATCTGCAT 392 >seq6476 Length=10381176 Score = 152 bits (168), Expect = 1e-31 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| | || || |||||||| ||||| || || ||||||| Sbjct 5656906 TACCTCCGCGAAGACGTAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAG 5656847 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || |||||||| || ||||||||||| | | |||||||||||||| Sbjct 5656846 AAAGAGTTCTGCCATCCTCTAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAG 5656787 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || ||||| ||||| ||||| || || || ||| || ||| | Sbjct 5656786 GAATACCTTCTTTGTCCTGGATCTTAGCTTTGACATTCTCTATAGTGTCAGAAGCTTCCA 5656727 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || | || || || || || || | || || || || || ||||| || Sbjct 5656726 CCTCGAGGGTGATGGTTTTTCCAGTAAGAGTTTTCACGAAGATTTGCATGAT 5656675 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||||||||| || ||||||||||| || || || ||||| || || |||| |||||||| Sbjct 5657343 AACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCGTCTTC 5657284 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 || || || ||||| || || | | |||||||| || || |||||||| || || || Sbjct 5657283 CAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTG 5657224 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || || || || || ||||| || || ||| | ||| ||||| | || || || || Sbjct 5657223 GATTTTGGCCTTCACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 5657164 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || | || || || || || ||||| Sbjct 5657163 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 5657134 >seq7367 Length=54923 Score = 107 bits (118), Expect = 4e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| ||| |||| || ||||| | ||| ||||||||||| || |||||||| || Sbjct 20309 ACCGCCTCGCAAGCGCAACACCAAGTGTAAAGTGGATTCTTTCTGGATGTTATAATCCGA 20368 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | || || ||||| | ||| || |||||||| || | |||||||||||| || || Sbjct 20369 CAGAGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGCGG 20428 Query 82703 TATTCCT 82709 |||||| Sbjct 20429 AATTCCT 20435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980848653330132