Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_025452.1 Length=155346 Score E Sequences producing significant alignments: (Bits) Value seq2061 322 5e-83 seq2042 221 1e-52 seq3161 96.9 3e-15 >seq2061 Length=505 Score = 322 bits (356), Expect = 5e-83 Identities = 338/444 (76%), Gaps = 3/444 (1%) Strand=Plus/Plus Query 80067 TTGTTATCAGGAGGCCGCGACGATACCACCACCAGTTTCGACTTCGCTAAATTCCATATC 80126 ||||||| | | |||| ||||| || ||| ||| |||||| || | || || Sbjct 34 TTGTTATGACGCGGCC---ACGATGCCCATGCCACCTTCCACTTCGGAGAACGCAATGTC 90 Query 80127 TGGGCGAACGGCGGCGAAATCAAGATACACCCAGTTAATGCTGTATTCAGGCTTGAGCCA 80186 || || ||||| |||||||| || || | |||||| ||||||||||| || || ||||| Sbjct 91 CGGACGGACGGCTGCGAAATCGAGGTAGATCCAGTTGATGCTGTATTCTGGTTTCAGCCA 150 Query 80187 GATACCCGCAACCATCTGGTTCGCAGCGATGATATCGGCAGTGTTGTTGTCTGCATCACA 80246 |||||| || | ||| ||||| || || | | || | |||||||||| | ||||| Sbjct 151 GATACCTGCGATCATTTGGTTGGCGGCTACAACCGAAGCCGGGTTGTTGTCTTCGTCACA 210 Query 80247 CTTGACAGTACCGTCATAGATCGCGCCCATGTTGGTCAGCTGACGCAGATACGGACGCAC 80306 ||||| |||| || ||| || |||||| | ||||||| || | ||| || || Sbjct 211 TTTGACCTTACCATCGACGATTGCACCCATGCCGATCAGCTGGCGAACATATGGGGTGAC 270 Query 80307 CGCGTTGCTGAACAGGCTGCGAGTGAACTCATCGTTGTTCTCACCAAGGTAGTATTTGGC 80366 ||||||| |||||| ||| || ||| ||||||| ||||| || ||||||||||| || Sbjct 271 CGCGTTGGTGAACAACTGGCGCGTAAACGCATCGTTATTCTCGCCCAGGTAGTATTTAGC 330 Query 80367 GATTGCAGCGATGTTCTGCTCGGCCATGATGAACAGGCCACGAACGTTGATGCGGTCGAA 80426 || |||| |||||| ||| |||||||| || ||||| ||||||||||||||||| Sbjct 331 AATGGCAGAGATGTTGGTCTCAGCCATGATAAAAGTACCACGGACGTTGATGCGGTCGAA 390 Query 80427 CGCAGATGGGCGAGTCAGGCCAGTCTTGTCCCCGTACAACACGATGCCTTCGTTGGAGAA 80486 |||| |||||| |||||||| || ||||| |||||||||||||||||||| ||| ||| Sbjct 391 CGCACTTGGGCGGGTCAGGCCGGTTTTGTCACCGTACAACACGATGCCTTCAGTGGTGAA 450 Query 80487 GGTGACGATGCTGTTGATCTGGTT 80510 ||| |||||||||||||||||||| Sbjct 451 GGTAACGATGCTGTTGATCTGGTT 474 >seq2042 Length=482 Score = 221 bits (244), Expect = 1e-52 Identities = 323/456 (71%), Gaps = 3/456 (1%) Strand=Plus/Plus Query 76036 GATGTTCTTCAGGATCAACTGACGGCGAAGAAGTTCAAGGAAGAATCCTGAATAACGACG 76095 ||| || |||| ||||||||| || ||||| || | | ||||| ||| || || || Sbjct 27 GATCTTTTTCATGATCAACTGTCGACGAAGCAGGCCCAAGAAGATGAGTGAGTACCGGCG 86 Query 76096 ACGCAAGCCTGCGCAGAATTTATTGAAGCGCAGTTCTTCCTGAGTGATTTCAGCAAGGTT 76155 |||| | || ||||| || |||||||| || || |||| | |||| | || | Sbjct 87 GCGCAGACGAGCACAGAACTTCTTGAAGCGATTCTCATCACGAGTTACTTCACCGAGATC 146 Query 76156 GGAACCACCGATGTTGATAGAACCTTCC---TCTTGGAGACGGCTCTTAGGGATCATCAG 76212 || ||||| ||||| || | || | | ||||||||||| ||| | || Sbjct 147 ACTCCCGCCGATATTGATGTTGCCGCCACCGTCATCCAATCGGCTCTTAGGAATCTTGAG 206 Query 76213 AGCCTCATAGAGCTTCTCACGGAAGTATACCACATGATCCATTTGACCCAGCTGATCGCC 76272 ||| | || ||||| |||||||| ||||||||||||||| |||||||| || || Sbjct 207 AGCACCGTACAGCTTGCTGCGGAAGTAATTCACATGATCCATTTGGCCCAGCTGGTCACC 266 Query 76273 ACCGCCTACGTTGGAGATCTCCGTTGCGTTATTCCCTTCACGACGTGGCAACCAGTAGTC 76332 || || | | || || || || ||||| | || ||||||||||||| ||||||||| Sbjct 267 GCCACCGATGGTGCTTATTTCGGTCGCGTTCTGTCCCTCACGACGTGGCATCCAGTAGTC 326 Query 76333 TTCGGCGATACCCATCAGATGAGTGTTGCCTGCCACTTTACCAGTGGTGCGGTCATACGC 76392 || ||||||||||| || ||||||| |||| || || || || |||| ||| | Sbjct 327 CTCAGCGATACCCATGAGGTGAGTGTCGCCTTGTACCTTGCCGGTCTGACGGTTATATGA 386 Query 76393 CAGACGGTTCTTGAATTTACCCATCATCGCCTGCATATACTCTTCCGCAGACTTCTTGCC 76452 ||| |||||| || || ||||||||| |||||||||||| || || ||||| || Sbjct 387 CAGGTTGTTCTTAAACTTGCCCATCATCATGGCCATATACTCTTCAGCGGATTTCTTACC 446 Query 76453 CAGAGTACCCACGTCGAGATAGAACGCTCGCTTCTC 76488 || |||| ||||| || ||||| || |||||||| Sbjct 447 CAACATACCGACGTCAAGGTAGAATGCGCGCTTCTC 482 >seq3161 Length=466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 59296 TCGGTGACCTGCTCAGGATGAATGACCTTCACCATGTTCCACTGCTCAAGCAGCTTGATA 59355 || |||| ||| |||||||| ||| | |||| |||||||| ||||| |||| Sbjct 455 TCAGTGATCTGTTCAGGATGCTTGATACGAATCATGCCACACTGCTCTAGCAGGCGGATA 396 Query 59356 AT-ACGATTCATTCGCAGGATGTCCTCACGGTTGAAGCCGTTGTAATGGCCATCCAGCAT 59414 || ||| ||||| |||||||| || || ||| || ||||| | | || || | ||| Sbjct 395 ATGACGGTTCATGCGCAGGATATCTTCCCGGCACAATCCGTTACGACGCCCCTCAAACAT 336 Query 59415 GAACAAATGCTTGAAGTGAACGATATAATACTTGCCATACTTATGAAGAATATGGCAAGT 59474 | || ||||||||||||||||| |||||||| || || |||||||| || Sbjct 335 ATAGAAGTGCTTGAAGTGAACGATGTAATACTTCCCGCCGCGCTGGGTGATATGGCAGGT 276 Query 59475 CTGATACAGA 59484 |||||||||| Sbjct 275 CTGATACAGA 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496495962274880