Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq61286 116 3e-21 seq6559 114 1e-20 seq6476 102 7e-17 >seq61286 Length=444 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| |||||||| ||||| || || |||||||||||||| | Sbjct 166 CCACCACGAAGTCTCAATACCAAATGCAACGTGGATTCTTTCTGAATGTTGTAATCAGAA 225 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| ||||| ||||| ||||| | |||||| || | || Sbjct 226 AGCGTGCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 285 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| |||| ||| | | |||||| || || || Sbjct 286 ATTCCTTCCTTATCC-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGACGCCTCAAC 344 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || ||||| ||||| || || |||||||| Sbjct 345 TTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 392 >seq6559 Length=1815223 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | ||||||||| || ||| ||||| ||||| ||||| || | Sbjct 1624882 CCACCACGTAAACGGAGCACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAA 1624823 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || ||||| ||||| | ||| ||||||| ||| Sbjct 1624822 AGTGTGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCCGGTGGA 1624763 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || |||||| ||| |||||| || | | | | | ||||| | ||| || Sbjct 1624762 ATGCCTTCTTTGTCC-TGAATTTTTGCTTTGACATTCTCGATTGTGTCCGAAGCTTCAAC 1624704 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| ||||| || || || |||| ||||| || || |||||||||| Sbjct 1624703 CTCCAAAGTGATGGTCTTTCCTGTCAGGGTTTTAACGAAGATCTGCATTC 1624654 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||||| | || ||||| || || ||||| || | Sbjct 1624656 TTCCACCACGCAGTCGGAGAACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCTG 1624597 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||||| ||| |||| || |||||||| || || || ||||| |||||||| || | | Sbjct 1624596 ACAAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCG 1624537 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || || || ||| ||||| || | | | | | |||||| | ||| | Sbjct 1624536 GGATGCCTTCTTTATCCTGAATCTTCGCTTTGACATTCTCAATCGTGTCCGAAGCTTCGA 1624477 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| ||||| || || || ||||||||||| || || |||||||||| Sbjct 1624476 CCTCCAAAGTGATAGTCTTTCCTGTCAAAGTTTTAACGAAGATCTGCATTC 1624426 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | |||||| |||| ||| | || ||||| ||||||||||| || | | Sbjct 1625794 CCTCCACGAAGCCTCAAAACCAGATGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAC 1625735 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| ||||| || || ||||| | |||||| || | || Sbjct 1625734 AGTGTGCGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625675 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||||| ||| ||| | ||||| | || | | |||||| || || || Sbjct 1625674 ATACCTTCTTTGTCC-TGAATTTTCGCCTTCACATTTTCGATCGTGTCAGACGCCTCAAC 1625616 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || ||||| ||||| || || |||||||| Sbjct 1625615 TTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGACGAAAATCTGCAT 1625568 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| |||||||| ||||| || ||||||||||||||||| | Sbjct 1625338 CCACCACGAAGTCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAATCAGAA 1625279 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| ||||| || || ||||| | |||||| || | || Sbjct 1625278 AGCGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 1625219 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| |||| ||| | | |||||| | || || Sbjct 1625218 ATTCCTTCCTTATCC-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCAGATGCCTCAAC 1625160 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| ||||| || || || ||||| || || || ||||| Sbjct 1625159 CTCCAGTGTGATGGTTTTTCCTGTTAAGGTTTTAACGAAAATTTGCAT 1625112 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || |||| || ||||| ||||| || || Sbjct 1625987 CTCTTTCTGAATGTTGTAATCAGAAAGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAA 1625928 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || |||| |||||| || | ||||| | || |||| | ||| ||| | ||||| Sbjct 1625927 GATTAACCTCTGCTGATCTGGAGGAATACCTTCTTTGT-CTTGAATTTTCGCCTTCACGT 1625869 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || || |||| |||||| || || || ||||| ||||| | Sbjct 1625868 TTTCGATCGTGTCAGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAAGGTTTTGA 1625809 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 1625808 CGAAAATCTGCAT 1625796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | || || || |||| || ||||| ||||| || || Sbjct 1625530 TCCTTCTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAG 1625471 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| | |||||| || | || | | ||||||||| ||| ||| || || | | | Sbjct 1625470 ATCAATCTCTGCTGATCTGGGGGGATACCTTCCTTGTCC-TGAATTTTGGCTTTGACATT 1625412 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | || ||||||| ||||| ||||||||||| | || || || Sbjct 1625411 TTCGATTGTGTCCGAAGCCTCAACCTCCAGTGTGATGGTTTTACCCGTGAGCGTCTTGAC 1625352 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1625351 GAAAATCTGCAT 1625340 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| || || ||||| |||| || ||| || |||| || Sbjct 1624408 ACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1624349 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || ||||| |||||||| || | || | | ||||||||| Sbjct 1624348 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGCGGGATTCCTTCCTTGTCCTGA 1624289 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||||| | | | |||||| | || || || | || || || || Sbjct 1624288 ATCTTTGCCTTCACGTTCTCGATGGTGTCGGAAGCCTCAACTTCAAGAGTTATGGTCTTC 1624229 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || || ||||| ||||||||||| Sbjct 1624228 CCAGTTAACGTCTTCACGAATATCTGCAT 1624200 >seq6476 Length=10381176 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| ||||||||||||| | ||||| |||| ||||||||||| || || || Sbjct 5657324 TCTTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCGTCTTCCAGCTGCTTGCCAGCGAAA 5657265 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||| || |||| |||| | || |||||| ||| || ||||| || Sbjct 5657264 ATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTT 5657205 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| || || | ||||| ||||| || || | ||||||||| Sbjct 5657204 TCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTGCCGGTGAGAGTTTTCACG 5657145 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 5657144 AAGATTTGCAT 5657134 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | |||| ||||| || ||||||||||| | | |||| | || || Sbjct 5656886 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTTCTGCCATCCTCT 5656827 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || ||||| ||||| || || || || | ||||| | || |||||| | Sbjct 5656826 AGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGG 5656767 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| || | | | | | ||||| | ||||||||| | ||||| ||||| Sbjct 5656766 ATCTTAGCTTTGACATTCTCTATAGTGTCAGAAGCTTCCACCTCGAGGGTGATGGTTTTT 5656707 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||||||| || || ||||| Sbjct 5656706 CCAGTAAGAGTTTTCACGAAGATTTGCAT 5656678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | |||| ||| || || ||||| ||||| | | || | | || || Sbjct 5657114 ACCAAATGGAGCGTAGACTCTTTCTGGATGTTATAATCTGAAAGAGTCCTGCCATCTTCG 5657055 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || ||||| |||| |||||||| |||| |||| || || ||||| | Sbjct 5657054 AGTTGCTTGCCGGCAAAAATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGG 5656995 Query 35648 ATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| |||| ||| | | ||||| | ||| || || | ||||| ||||| Sbjct 5656994 ATCTTG-GCTTTTACGTTCTCGATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTT 5656936 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||||||||| || ||||| Sbjct 5656935 GCCAGTGAGAGTTTTCACAAAGATTTGCAT 5656906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450355270843040