Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8374 129 8e-25 seq7702 84.2 3e-11 seq6487 84.2 3e-11 >seq8374 Length=807232 Score = 129 bits (142), Expect = 8e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| || || || | || | |||||| || |||||||| ||||| || || || || Sbjct 791820 AATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGGATATTTTCTATGGCAATTTG 791761 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 ||| ||||| ||||| | ||||||||| |||| || || || |||||||| || Sbjct 791760 AAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATTAA 791701 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||||||||| || || || ||| |||||| ||||||||||| ||||| |||||||| Sbjct 791700 ATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAATA 791641 Query 40063 TTTTTCATC 40071 ||| || || Sbjct 791640 TTTCTCGTC 791632 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 39421 ttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCAT 39480 ||||| ||||||||| | | |||||| || ||||| ||||| || || | ||| Sbjct 792523 TTTTTCAAATCCTAACGCAACGAACAATCTGTCCGCAACGAATTCGATATAGTTACACAT 792464 Query 39481 CATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTC 39540 | | |||||||||||||| |||| ||| || | |||| ||| | ||| || ||||| Sbjct 792463 GAGTGTGCAATTCATTCCTATCAGTTGAACCGGCAACGCCTGCGTCAAAAATTCCTTTTC 792404 Query 39541 GATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAA 39600 || ||||| || || |||| |||||| | || ||| ||| || | | Sbjct 792403 AATCTCTACAGCGTCCATTATGATCGATTTCACACGCTCGAACGACGGCTTTTGTACAAT 792344 Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||||||||| ||| || ||||| || || |||| |||| Sbjct 792343 ATGTTTAAACAATAAACACGCGAAATCGCAGTGTAATCCCT 792303 >seq7702 Length=1018864 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||||| ||| |||||||| |||||| | || ||||| || |||| |||| Sbjct 551968 GTATATAAGGTTTCAAATTCATCACCCCAAGTTGTAATTAACCCAGGGCACTCATGTGGA 551909 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||||||| |||||||||||||| ||| ||||||||||||| ||| |||||||| Sbjct 551908 CACATCAGATTCCACACATCATCATGAAAAACACGTTTCATAAATAAATCTGGAATCCA 551850 >seq6487 Length=3923646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||||||||| || || || | ||||||| |||| || | || Sbjct 1174391 TCCAGCCGAAGAAATGCATCGACGTGAGCTTCTCAGTTGTTGGATCTCCTATGTGGACAT 1174450 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACTC 68559 ||| ||||| ||||||||||||||||||| || |||||||||| | || |||| Sbjct 1174451 TCAATGATTGCGACTGATCGATGAAAGCTCCTCGGTCGGCCGCCATTTCGAGAATTACT- 1174509 Query 68560 TTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC 68614 || || || || ||||| | |||||| ||| | ||| | ||| || |||| || Sbjct 1174510 TTCTGTGGTATCTCCCAGACAGTCTTGTAAAGCACTTTCAGATCGTCGGGAATGC 1174564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686240884228320