Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq2061 289 3e-73 seq2042 239 5e-58 >seq2061 Length=505 Score = 289 bits (320), Expect = 3e-73 Identities = 340/458 (74%), Gaps = 4/458 (1%) Strand=Plus/Plus Query 114700 GAAAAGCCC-CCGAAGGGGCGATTCATT---AAGACGCTGAAACGATACCGCCGCCAGAC 114755 |||| |||| |||||| || | |||| | ||||| | ||||| || |||| Sbjct 8 GAAATGCCCTCCGAAGAGGGCACACATTGTTATGACGCGGCCACGATGCCCATGCCACCT 67 Query 114756 TCGACTTCTGAGAACTCGATGTCTGGACGTACTGCGGCAAAGTCCAGATAGATCCAGTTG 114815 || ||||| |||||| | ||||| ||||| || || || || || || |||||||||||| Sbjct 68 TCCACTTCGGAGAACGCAATGTCCGGACGGACGGCTGCGAAATCGAGGTAGATCCAGTTG 127 Query 114816 ATGGAGTAGGCTGGCTTCAGCCACACACCCGCGACCATCTGGTTGGCAGCGACTACCGCA 114875 ||| ||| |||| |||||||| | ||| |||| ||| |||||||| || || |||| | Sbjct 128 ATGCTGTATTCTGGTTTCAGCCAGATACCTGCGATCATTTGGTTGGCGGCTACAACCGAA 187 Query 114876 GCCGGGTTGTTGTCTTCATCGCACTTCACTTTACCGTCAGAGATTGCTCCCAGACCGATC 114935 ||||||||||||||||| || || || || ||||| || |||||| |||| |||||| Sbjct 188 GCCGGGTTGTTGTCTTCGTCACATTTGACCTTACCATCGACGATTGCACCCATGCCGATC 247 Query 114936 AGTGTACGGATGTACGGTGCAATTGAGTTAGTGAACAGCAGACGCGTGTTGGCATCGTTG 114995 || || | || || | | | ||| ||||||| | | ||||| |||||||| Sbjct 248 AGCTGGCGAACATATGGGGTGACCGCGTTGGTGAACAACTGGCGCGTAAACGCATCGTTA 307 Query 114996 TTCTCACCCAGATAGTATTTGGCAGACGCGGTGATGTTCTGCTCAGCCATAATGAACAGG 115055 ||||| ||||| |||||||| ||| || | |||||| ||||||||| || || Sbjct 308 TTCTCGCCCAGGTAGTATTTAGCAATGGCAGAGATGTTGGTCTCAGCCATGATAAAAGTA 367 Query 115056 CCGCGCACGTTGATACGGTCGAACGCTGAAGGAGCGCTCAGGCCGGTCTTATCACCATAC 115115 || || |||||||| ||||||||||| || | |||||||||| || ||||| ||| Sbjct 368 CCACGGACGTTGATGCGGTCGAACGCACTTGGGCGGGTCAGGCCGGTTTTGTCACCGTAC 427 Query 115116 AGCACGATGCCTTCGGTTGGGAAGGTAACGATACTGTT 115153 | |||||||||||| || | |||||||||||| ||||| Sbjct 428 AACACGATGCCTTCAGTGGTGAAGGTAACGATGCTGTT 465 >seq2042 Length=482 Score = 239 bits (264), Expect = 5e-58 Identities = 337/477 (71%), Gaps = 6/477 (1%) Strand=Plus/Plus Query 112713 CCAGTCGTCTTCGGTGGTGATCTTTTTCAGGATACACTGACGACGCAGCAGGGTCTCAAA 112772 ||||||||||||| | ||||||||||| ||| |||| ||||| |||||| | || Sbjct 9 CCAGTCGTCTTCGCTCACGATCTTTTTCATGATCAACTGTCGACGAAGCAGGCCCAAGAA 68 Query 112773 GATG---GAGCTNNNNNNNNNNNNNNNACGTGTACAGAACTTGGCGAAGCGATACTCCTC 112829 |||| ||| ||| | ||||||||| |||||||| ||| || Sbjct 69 GATGAGTGAG---TACCGGCGGCGCAGACGAGCACAGAACTTCTTGAAGCGATTCTCATC 125 Query 112830 ACGAGTCACCTCAGCAAGGTCGGAGCCACCAATGTTGATATTACCACCACCGTCGTCGAT 112889 |||||| || ||| | || || || || || ||||| || || |||||||| || | Sbjct 126 ACGAGTTACTTCACCGAGATCACTCCCGCCGATATTGATGTTGCCGCCACCGTCATCCAA 185 Query 112890 ACGGCTGGAGGGGATCTTCAGGGCACGATACAGCTTCTTAAGGAAGTACATGACATGATC 112949 ||||| || ||||| || |||| |||||||| | ||||||| | |||||||| Sbjct 186 TCGGCTCTTAGGAATCTTGAGAGCACCGTACAGCTTGCTGCGGAAGTAATTCACATGATC 245 Query 112950 CATGTTCCCCAGCTGATCGCCGCCGCCCAGAGTATCAATCTCTGTAGCATTCTGGCCTTC 113009 ||| | |||||||| || ||||| || | || || || || || ||||| || || Sbjct 246 CATTTGGCCCAGCTGGTCACCGCCACCGATGGTGCTTATTTCGGTCGCGTTCTGTCCCTC 305 Query 113010 ACGACGTGGCAACCAGTAGTCCTCAGCGATACCCATCAGGCTGGTGCCAGTCTGGATCTT 113069 ||||||||||| |||||||||||||||||||||||| ||| ||| | || | ||| Sbjct 306 ACGACGTGGCATCCAGTAGTCCTCAGCGATACCCATGAGGTGAGTGTCGCCTTGTACCTT 365 Query 113070 ACCAGAGGTGCGGTCATACGACATGTTGGTCTTGAACTTAGCCATCATCATCTGCATGTA 113129 || | |||| ||| |||| |||| |||| ||||| |||||||||| ||| || Sbjct 366 GCCGGTCTGACGGTTATATGACAGGTTGTTCTTAAACTTGCCCATCATCATGGCCATATA 425 Query 113130 TTCTTCAGCAGACTTCTTAGGCAGTGTACCCACGTCCAGATACCAGGCCCGCTTCTC 113186 |||||||| || |||||| || |||| ||||| || || | || |||||||| Sbjct 426 CTCTTCAGCGGATTTCTTACCCAACATACCGACGTCAAGGTAGAATGCGCGCTTCTC 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518279560377600