Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_027351.1 Length=147745 Score E Sequences producing significant alignments: (Bits) Value seq1998 264 1e-65 seq43336 161 9e-35 seq1985 134 1e-26 >seq1998 Length=468 Score = 264 bits (292), Expect = 1e-65 Identities = 320/430 (74%), Gaps = 13/430 (3%) Strand=Plus/Minus Query 9031 ATGAGTCTTGGTGGTACAGAGTCAAACCCTGCTGGTGTTTCTCCTCTTGTTGGGTGTTAC 9090 ||||| |||||||||| || ||||||||| |||||||| ||||| ||||| |||||| Sbjct 435 ATGAGCTTTGGTGGTACTGACTCAAACCCTATGGGTGTTTCACCTCTAGTTGGTTGTTAC 376 Query 9091 CGTGCTTTCCGTGAAAAGATTCTGATTGAGAACCTCGAAACAATTGGTGCTTCCAAAGAT 9150 || |||||||| |||||| |||| ||||||||| | ||| || || || | || || Sbjct 375 CGCGCTTTCCGAGAAAAGGTTCTTATTGAGAACTTGGAAGTCATCGGGGCAACTAAGGAC 316 Query 9151 CTTGGTGGTATCATCGAACTCAAGATCCCTTCTCAG-ATCTTGAACAAGGCAGCGATTGA 9209 || || || ||||| || || ||||| ||||| ||| ||| | ||||||||||| || || Sbjct 315 CTCGGCGGGATCATTGAGCTTAAGATTCCTTC-CAGTATCCTTAACAAGGCAGCAATCGA 257 Query 9210 CCCGAAATCACCAGAATCAGAAATGGTTCAAGGATTGATGGCGGATGCTGCAAACGCCCA 9269 | ||| |||||| | ||||||||| ||||||||||| |||||| || |||||||| Sbjct 256 CAAGAATAGCCCAGAAGCTGAAATGGTTGAAGGATTGATGCAGGATGCGGCTAACGCCCA 197 Query 9270 CGCAGGTGAGCAAGCCTACTTCATCCTGCCTTCAGATATGAACGCTCAGGGTGGTGAACA 9329 |||||||||||| |||| |||||| |||| ||||||||||| | | | | | Sbjct 196 CGCAGGTGAGCAGGCCTTCTTCATGTTGCCGTCAGATATGAAGGAAAACGCCCCAGCA-- 139 Query 9330 GTACAAGATGTCTCTTAAAGGGATTGACGGTGCAGGTAAGCAGTACAGTAC-ACAG---G 9385 | | ||| | |||||||| || || ||| | ||||||||||| || || ||| Sbjct 138 -TTCTCCATGACACTTAAAGGTATCGAAGGTTCCGGTAAGCAGTATAGCACTTCAGCCCT 80 Query 9386 AACTGGTGAACTCTCGTAAGAAGGCAATCCTCGACAGATTTGGCGCTGGATTCATCAACC 9445 || ||||| ||||||||| | ||| | ||| | || |||||||| || || ||| Sbjct 79 AATCAGTGAA----CGTAAGAAGTCTATCTTGGACCGCTTCGGCGCTGGCTTTATGAACG 24 Query 9446 TTGGTAACGA 9455 | ||||| || Sbjct 23 TAGGTAATGA 14 >seq43336 Length=1079 Score = 161 bits (178), Expect = 9e-35 Identities = 322/472 (68%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 6850 ACATTCGGACCTGCCAGCCCTAAGCAGAAAATGATCCTGGAAAACA-ACGCACAAATCCT 6908 || |||| || ||||| ||| || | |||||||| ||| || |||| | || || Sbjct 609 ACGTTCGCTCCCGCCAGTATTAAACAACAGATGATCCTT-AAATCAGACGCTGAGATTCT 667 Query 6909 GATCATTGGGGGTGCGGCGGGGTCAGGTAAATCCTACCTGCTTCAATTAATGCCGTTAAA 6968 ||||| || ||||| || || ||||| || ||||| |||||||| |||||||| | Sbjct 668 AATCATCGGCGGTGCTGCTGGTTCAGGGAAGTCCTATCTGCTTCAGTTAATGCCTCTGTT 727 Query 6969 TATCATCGACGATCCACGAACGAACTGCATCATGTTCCGTAGAAACACCCCTCAGTTGAA 7028 ||| || ||||| || ||||| ||| |||||||||| || || ||| | Sbjct 728 TATTATTGACGACCCGCGAACAGCCTGTGTCATGTTCCGCCGATCAGTACCACAGCTACG 787 Query 7029 GGGTGGTGGTGGTCTGTATGATACAGCACGAGGCATTTATACACAGCTTGATCCGGAATG 7088 ||| |||||||||| ||| | || || ||||||| || || ||| | | Sbjct 788 TGGTCAAGGTGGTCTGTTTGACAAGGCTAAAGATATTTATAACCAACTCGATGTCAACTC 847 Query 7089 GAAACCACGCTTCAGGGAGAAAGACCTGGAAGCAATTTTCCCTTCTGGTGCTAAAGTAAA 7148 |||||||| || | ||||| || ||||||| | ||||| || |||||||| || Sbjct 848 TAAACCACGATTTCGTGAGAATGAGATGGAAGCTTTATTCCCAAACGGGGCTAAAGTTAA 907 Query 7149 ATGGTCCCACATGGAATACGAGAAAGATAAGTATTCTCAC-CAGGGTCTACAGTACACCT 7207 ||| ||| | ||| || | ||| || || ||||| ||| | | || | Sbjct 908 GTGGCAGTCGATGCAGCACGTAAAGAACAAGC-TTGACATTCAGGGCCTAGAATTTACTT 966 Query 7208 TTGTTGGTTTTGACGAAGGAACACAGTTTGAATGGTCTCAGATCGAATACCTCATGTCTC 7267 || | || | ||||||| || |||||||||||| ||| |||||||| | ||||||| Sbjct 967 TTATAGGCGTAGACGAAGCCACCCAGTTTGAATGGGAACAGCTCGAATACATGATGTCTC 1026 Query 7268 GTCTTCGTTCTGAATCCAAATACCCAAGCCGTATGGTCATCTCATGTAACCC 7319 || | ||||| || |||||||| ||| ||||| || ||||||||||| Sbjct 1027 GTTTGCGTTCATCTTCTAAATACCCGTCCCGAATGGTTATGTCATGTAACCC 1078 >seq1985 Length=318 Score = 134 bits (148), Expect = 1e-26 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 21150 AGGTAAGTGTGCTTCTGGTAACTACGTTGACGTTGTTCGTTTCGGTCACTGGCTGAAATT 21209 |||||| ||| |||||||| || | ||||||| | || || |||||| |||| || Sbjct 303 AGGTAAATGTTCTTCTGGTCNGTATGCTGACGTTATCCGCTTNTCCCACTGGTTGAAGTT 244 Query 21210 CCGTACAGAAGAAAGTGTGTTTGGATACATGTCTCGCCGTTCTAACATGGGTCTCTCCAT 21269 ||||| ||||| || || |||||| | || || ||||||||| | ||||| Sbjct 243 CCGTATGGAAGAGTCAGTATTCTCCTACATGCACCAGCGCTCAAACATGGGTATGTCCAT 184 Query 21270 GAAGATGAGTGATGACGATCTTCCTAACCTGAAATCTGTCATGATGAACAACCCGATCAA 21329 ||||||||| || || || | || ||||||| |||| || ||||| | || || || Sbjct 183 GAAGATGAGCGACGATGACTTGCCAAACCTGAGCACTGTGATCCTGAACGATCCTATTAA 124 Query 21330 CGTTGGTATTGCAAACGGGTCTATCCTTACTGGATACGATGACGTTAACAAAGTGTTCTA 21389 ||| |||||| || || || ||| | || ||||| ||||| | ||||| || ||||| Sbjct 123 CGTAGGTATTCGTAATGGTTCCATCTTAACCGGATATGATGAGGAAAACAAGGTCTTCTA 64 Query 21390 CGATCCGGTGATCACAATCCC 21410 ||| || | ||||| || || Sbjct 63 CGACCCAATCATCACCATTCC 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472196412938400