Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8374 102 6e-17 seq6583 84.2 2e-11 >seq8374 Length=807232 Score = 102 bits (112), Expect = 6e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||| ||||||| ||| || ||||| ||||| || || ||||| || || ||| Sbjct 791635 GAGAAATATTTTATCTCTCATGTCTTGGCATTTTTCGCCGCTTCTGACGGTATTGTTAAT 791694 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||||| || | || || ||||| || | | |||||||| ||||| || Sbjct 791695 GAAAATTTAATTGAAAGATTCAGTCAGGAAGTGAAAATCACTGAAGCACGTTGTTTCTAC 791754 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || ||||||||||||||||||||||| ||||| || ||||| Sbjct 791755 GGCTTTCAAATTGCCATAGAAAATATCCATTCTGAGATGTA 791795 >seq6583 Length=1017230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||| ||| ||| ||| ||||| || | ||| | | |||||||||||| || | Sbjct 910409 GACGTATTATAATGTCCGCTTGGAATCCGGCCGACATTCCGAAGATGGCATTGCCGCCGT 910350 Query 41065 GTCA---TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATC 41121 | || ||| || ||||| ||||| || || ||| |||| || | || | Sbjct 910349 GCCACGCTTTCGTA---CAGTTCTACGTAAATAACGGCGAATTGTCCGCGCAGCTTTACC 910293 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 | ||| | |||||||| || ||||| ||||||||||||||| || | ||||||| Sbjct 910292 AGAGAAGCGCGGACATGGGTCTGGGGGTGCCGTTTAACATAGCGTCGTACTCCCTGCTCA 910233 Query 41182 CGTATATGATTGCACACGTTACC 41204 | || ||||| || || || ||| Sbjct 910232 CCTACATGATCGCTCATGTCACC 910210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397079195316940