Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq34011 86.0 7e-12 seq6487 82.4 8e-11 >seq34011 Length=760 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 78478 TCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 ||||| | |||||| | || | ||||| || || |||| ||| || | | |||| Sbjct 631 TCCCGCAGTAGGTGCGGATTGACGATGACAAATTCTCCGGACAGCACGCGCCTTATGTAG 572 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 |||||| | ||||||||||||| | ||||| ||||| | ||||| || |||||||| Sbjct 571 ATGTTGCTTGTGTACGGCTCGATGGATTCGTTATTCCCTAAAATCTGCGCCGTCGAGGCC 512 Query 78598 GTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCT 78649 || ||||| ||||| | | || || |||| | || ||| || ||||| Sbjct 511 GTTGGCATAGGTGCTATTAAAAGCGAGTTCCTTACTCCGTGCTTCGCGATCT 460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 ||||| || ||||| | | |||||| | | | || || ||||| || ||||||| Sbjct 460 AGATCGCGAAGCACGGAGTAAGGAACTCGCTTTTAATAGCACCTATGCCAACGGCCTCGA 519 Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGC 20474 | || ||||| | ||||| ||||| | ||||||||||||| | |||||||||| | Sbjct 520 CGGCGCAGATTTTAGGGAATAACGAATCCATCGAGCCGTACACAAGCAACATCTACATAA 579 Query 20475 GTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTT 20529 | || ||| |||| || || ||||| || || |||||| | || ||||| Sbjct 580 GGCGCGTGCTGTCCGGAGAATTTGTCATCGTCAATCCGCACCTACTGCGGGACTT 634 >seq6487 Length=3923646 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 ||||| || ||||| | | |||||| | | | || || ||||| || ||||||| Sbjct 1174903 AGATCGCGAAACACGGAGTAAGGAACTCGCTTTTAATAGCACCTATGCCAACGGCCTCGA 1174844 Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGC 20474 | || ||||| | ||||| ||||| | ||||||||||||| | |||||||||| | Sbjct 1174843 CGGCGCAGATTTTAGGGAATAACGAATCGATCGAGCCGTACACAAGCAACATCTACGTAA 1174784 Query 20475 GTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTT 20529 | || ||| |||| || || ||||| || || |||||| | || ||||| Sbjct 1174783 GGCGCGTGCTGTCCGGAGAATTTGTCATCGTCAATCCGCACCTACTGCGAGACTT 1174729 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 78487 AGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTC 78546 |||||| | || | ||||| || || |||| ||| || | | |||||||||| | Sbjct 1174741 AGGTGCGGATTGACGATGACAAATTCTCCGGACAGCACGCGCCTTACGTAGATGTTGCTT 1174800 Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||||||||||||| | ||||| ||||| | ||||| || |||||||| || ||||| Sbjct 1174801 GTGTACGGCTCGATCGATTCGTTATTCCCTAAAATCTGCGCCGTCGAGGCCGTTGGCATA 1174860 Query 78607 GGTGC 78611 ||||| Sbjct 1174861 GGTGC 1174865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547991441910720