Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_028248.1 Length=136896 Score E Sequences producing significant alignments: (Bits) Value seq1985 136 3e-27 seq1998 127 2e-24 >seq1985 Length=318 Score = 136 bits (150), Expect = 3e-27 Identities = 202/286 (71%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 83118 GCACGTTTAGGAACTGTGATGATCGGGTCGTAGAACACATTGTTGTCTTCGTCAAAACCT 83177 || ||||| |||| |||||||| ||||||||||| || ||||| || || ||| | || Sbjct 34 GCTCGTTTTGGAATGGTGATGATTGGGTCGTAGAAGACCTTGTTTTCCTCATCATATCCG 93 Query 83178 GTCAGGATCGCACCATTCTTAATGCCAGTGTTGATTGGGTTGTTCATCAGGACAGACTTG 83237 || | ||| | |||||| ||| || ||| || || | ||||| | |||| | Sbjct 94 GTTAAGATGGAACCATTACGAATACCTACGTTAATAGGATCGTTCAGGATCACAGTGCTC 153 Query 83238 ATAACCGGAAGATCATCATCAGACATCTTCATGCTTAAACCCATGTTGGAGCGACGATGC 83297 | || | ||||| || |||||||||| | ||||||||| ||||| | ||| Sbjct 154 AGGTTTGGCAAGTCATCGTCGCTCATCTTCATGGACATACCCATGTTTGAGCGCTGGTGC 213 Query 83298 ATGTACCCAAACATAGATTCTTCAGATCTGAACTTGATCCAGTGTGCAAAACGAATAGCG 83357 ||||| || | || ||||| | |||||| | |||||| | || || ||| || Sbjct 214 ATGTAGGAGAATACTGACTCTTCCATACGGAACTTCAACCAGTGGGANAAGCGGATAACG 273 Query 83358 TCTGCATACTGACCTGAAGCACACTTACCTTCCCAGAAAGCGCCAA 83403 || |||||| |||| |||| ||| ||||| |||||||| ||||||| Sbjct 274 TCAGCATACNGACCAGAAGAACATTTACC-TCCCAGAATGCGCCAA 318 >seq1998 Length=468 Score = 127 bits (140), Expect = 2e-24 Identities = 284/420 (68%), Gaps = 11/420 (3%) Strand=Plus/Plus Query 90882 TTATCGTTACCGAGGTTAATAAAGCCAGCACCGAAACGGTCAAGAATCGCCTTCTTACGG 90941 || || ||||| | ||| ||||||||||| ||||| ||||| | || | ||||||||| Sbjct 11 TTGTCATTACCTACGTTCATAAAGCCAGCGCCGAAGCGGTCCAAGATAGACTTCTTACGT 70 Query 90942 GCATCAATCAAATCTTTAGTGGAATACTGCTTACCCATACCGTCAACCCCCTTCAGGGTC 91001 || || | || |||| |||||||||||| ||| || | || || || ||| Sbjct 71 TCACTGATTAGGGCTGAAGTGCTATACTGCTTACCGGAACCTTCGATACCTTTAAGTGTC 130 Query 91002 ATGGAGTAAAGCTCTTTACCAGACTTATC--TC-TATCAGACGGAAGTATAAAGAAACTT 91058 |||||| || ||| | || || || |||| ||||| | || ||||| Sbjct 131 ATGGAG-AATGCT-----GGGGCGTTTTCCTTCATATCTGACGGCAACATGAAGAAGGCC 184 Query 91059 TGCTCACCACTATGGGCGTTTGCTGCGTCAAGCATAAGGTCTGCAACCATTCTCCCTTCC 91118 |||||||| |||||||| || || || |||| | || |||||||| |||| Sbjct 185 TGCTCACCTGCGTGGGCGTTAGCCGCATCCTGCATCAATCCTTCAACCATTTCAGCTTCT 244 Query 91119 ATTGAATTCGGGTC-AATGCTGGCCTTGTTCAAAATATTGGAAGGAATTTTCAGCTCAAG 91177 |||| ||| | |||| |||||||| | ||| |||||||||| || ||||||| Sbjct 245 GGGCTATTCTTGTCGATTGCT-GCCTTGTTAAGGATACTGGAAGGAATCTTAAGCTCAAT 303 Query 91178 CACACCACCAAGGTCTTTGGAACAGCCAACAACCTCAAGGTTTTCAATCAGAACTTTCTC 91237 | || || ||||| || | || | || || | ||| ||||| ||||| || || Sbjct 304 GATCCCGCCGAGGTCCTTAGTTGCCCCGATGACTTCCAAGTTCTCAATAAGAACCTTTTC 363 Query 91238 ACGGAAAGATCTGTAGCAACCTATCATCGGTGACACACCTGCAGGGTTAGATTCTGTTCC 91297 ||||||| | ||| ||||| | | ||||| ||||| |||||| || || || || Sbjct 364 TCGGAAAGCGCGGTAACAACCAACTAGAGGTGAAACACCCATAGGGTTTGAGTCAGTACC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437513369818880