Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq1998 233 2e-56 seq1985 127 2e-24 >seq1998 Length=468 Score = 233 bits (258), Expect = 2e-56 Identities = 304/418 (73%), Gaps = 3/418 (1%) Strand=Plus/Plus Query 55696 TCATTCCCTAAGTTGATGAATCCCGCACCAAATCTGTCCAAGATCGCCTTCTTACGCTCT 55755 ||||| |||| ||| || || || || || || | ||||||||| | ||||||||| || Sbjct 14 TCATTACCTACGTTCATAAAGCCAGCGCCGAAGCGGTCCAAGATAGACTTCTTACGTTCA 73 Query 55756 TGTATTAGGTCCTTGGTACTGTACTGTTTACCAACCCCATCGATTCCCTTAAGGGTCATC 55815 |||||| | || || ||||| ||||| || ||||| || ||||| ||||| Sbjct 74 CTGATTAGGGCTGAAGTGCTATACTGCTTACCGGAACCTTCGATACCTTTAAGTGTCATG 133 Query 55816 TTATACTGCTCACCGCCCTTATCATTCATATCTGAAGGTAAGATGAAGTAAGATTGTTCA 55875 | | |||| | | || || ||||||||||| || || |||||| | | || ||| Sbjct 134 G-AGAATGCTGG--GGCGTTTTCCTTCATATCTGACGGCAACATGAAGAAGGCCTGCTCA 190 Query 55876 CCTGAATGTGCGTTTGCAGCGTCAGCCATCAGGCCACGAACCATATCTGCTTCAGGTGAT 55935 |||| || ||||| || || || ||||| || |||||| || ||||| || Sbjct 191 CCTGCGTGGGCGTTAGCCGCATCCTGCATCAATCCTTCAACCATTTCAGCTTCTGGGCTA 250 Query 55936 CTCGGGTCCATAGATGCCTTATTCAGAATTGAAGAAGGGATCTTTAATTCAATGATACCG 55995 || ||| || | |||||| || || || ||||| ||||| | |||||||| ||| Sbjct 251 TTCTTGTCGATTGCTGCCTTGTTAAGGATACTGGAAGGAATCTTAAGCTCAATGATCCCG 310 Query 55996 CCGAGGTCCTTAGATGCCCCTATAACTTCGAGGTTTTCGATCAGGATTTTTTCACGGAAT 56055 ||||||||||||| |||||| || ||||| | ||| || || || | ||||| ||||| Sbjct 311 CCGAGGTCCTTAGTTGCCCCGATGACTTCCAAGTTCTCAATAAGAACCTTTTCTCGGAAA 370 Query 56056 GCACGGTAACAACCAACAAGAGGTGATACACCTGTAGGGTTTGATTCTGTCCCACCAA 56113 || |||||||||||||| |||||||| ||||| |||||||||| || || ||||||| Sbjct 371 GCGCGGTAACAACCAACTAGAGGTGAAACACCCATAGGGTTTGAGTCAGTACCACCAA 428 >seq1985 Length=318 Score = 127 bits (140), Expect = 2e-24 Identities = 187/262 (71%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 47203 GGATCGTAGAACACTTTGTTGACGGAATCATACCCGGTCAGAATAGAGCCGTTGGTAATA 47262 || |||||||| || ||||| | |||||| ||||| | || || || || |||| Sbjct 58 GGGTCGTAGAAGACCTTGTTTTCCTCATCATATCCGGTTAAGATGGAACCATTACGAATA 117 Query 47263 CCGACATTCAGAGGACTGTTCATCAGGACTGACTTCAGGTTCGGCAGATCATCATCGCTC 47322 || || || | |||| ||||| | || | ||||||| |||| ||||| |||||| Sbjct 118 CCTACGTTAATAGGATCGTTCAGGATCACAGTGCTCAGGTTTGGCAAGTCATCGTCGCTC 177 Query 47323 ATTTTCATGGACAGGCCAAGATTAGAACGGCGAGACATGTAGGCGAAGATACTT--TCTT 47380 || |||||||||| || | || || || | |||||||| ||| |||| |||| Sbjct 178 ATCTTCATGGACATACCCATGTTTGAGCGCTGGTGCATGTAGGAGAA--TACTGACTCTT 235 Query 47381 CACTTCTGAACTTCAGCCAGTGACCAAAACGGACAACATCGACATACTGACCGGAGGCAC 47440 | | | |||||||| |||||| || |||| ||| || ||||| |||| || | || Sbjct 236 CCATACGGAACTTCAACCAGTGGGANAAGCGGATAACGTCAGCATACNGACCAGAAGAAC 295 Query 47441 ACTTACCTTCCCAGAATGCGCC 47462 | |||||| ||||||||||||| Sbjct 296 ATTTACCT-CCCAGAATGCGCC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456985617550560