Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_029072.1 Length=94766 Score E Sequences producing significant alignments: (Bits) Value seq1998 212 4e-50 seq43336 165 5e-36 >seq1998 Length=468 Score = 212 bits (234), Expect = 4e-50 Identities = 310/433 (72%), Gaps = 9/433 (2%) Strand=Plus/Minus Query 4455 TGGTCATGAGTCTTGGTGGTACGGAATCAAATCCTGCCGGGGTATCTCCGCTGGTAGGTT 4514 || ||||||| |||||||||| || ||||| ||| || || || || || || |||| Sbjct 440 TGATCATGAGCTTTGGTGGTACTGACTCAAACCCTATGGGTGTTTCACCTCTAGTTGGTT 381 Query 4515 GTTATCGAGCTTTCCGTGAGAAGATCCTGATTGAGAACCTTGAAACCATTGGTGCATCTA 4574 |||| || |||||||| || ||| | || ||||||||| | ||| ||| || ||| ||| Sbjct 380 GTTACCGCGCTTTCCGAGAAAAGGTTCTTATTGAGAACTTGGAAGTCATCGGGGCAACTA 321 Query 4575 AAGACCTTGGTGGTATTATCGAGCTTAAGATTCCTTCTCAG-ATCTTGAACAAGGCAGCA 4633 | ||||| || || || || ||||||||||||||||| ||| ||| | |||||||||||| Sbjct 320 AGGACCTCGGCGGGATCATTGAGCTTAAGATTCCTTC-CAGTATCCTTAACAAGGCAGCA 262 Query 4634 ATGGACCCAAGATC--CCCAGAATCAGAAATGGTTCAAGGATTAATGGCTGATGCTGCAA 4691 || ||| |||| ||||||| | ||||||||| ||||||| ||| ||||| || | Sbjct 261 ATCGAC--AAGAATAGCCCAGAAGCTGAAATGGTTGAAGGATTGATGCAGGATGCGGCTA 204 Query 4692 ACGCTCATGCTGGTGAACAAGCTTATTTCATCCTCCCTTCAGATATGAACGCGCAGGGTG 4751 |||| || || ||||| || || | ||||| | || ||||||||||| | | | Sbjct 203 ACGCCCACGCAGGTGAGCAGGCCTTCTTCATGTTGCCGTCAGATATGAAGGAAAACGCCC 144 Query 4752 GAGAACAGTACAAGATGTCCCTGAAAGGGATTGACGGCGCTGGTAAACAATACAGTACAC 4811 || | | | ||| | || ||||| || || || | ||||| || || || || Sbjct 143 CAGCA---TTCTCCATGACACTTAAAGGTATCGAAGGTTCCGGTAAGCAGTATAGCACTT 87 Query 4812 AAGAACTTGTCAACTCCCGTAAAAAGGCAATCCTTGACAGATTTGGTGCTGGTTTTATCA 4871 || || ||| ||||| ||| | ||| | ||| | || || ||||| ||||| | Sbjct 86 CAGCCCTAATCAGTGAACGTAAGAAGTCTATCTTGGACCGCTTCGGCGCTGGCTTTATGA 27 Query 4872 ACCTTGGTAACGA 4884 || | ||||| || Sbjct 26 ACGTAGGTAATGA 14 >seq43336 Length=1079 Score = 165 bits (182), Expect = 5e-36 Identities = 305/442 (69%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 2310 ATGATCCTGGAAAACA-ACGCACAAATCCTGATCATTGGGGGTGCGGCGGGGTCAGGTAA 2368 |||||||| ||| || |||| | || || ||||| || ||||| || || ||||| || Sbjct 639 ATGATCCTT-AAATCAGACGCTGAGATTCTAATCATCGGCGGTGCTGCTGGTTCAGGGAA 697 Query 2369 ATCCTACCTGCTTCAATTAATGCCATTGCAAATCATCGACGACCCAAGAACAAACTGCAT 2428 ||||| |||||||| |||||||| || || || |||||||| ||||| ||| | Sbjct 698 GTCCTATCTGCTTCAGTTAATGCCTCTGTTTATTATTGACGACCCGCGAACAGCCTGTGT 757 Query 2429 CATGTTCCGTAGAAACACCCCTCAGTTGAAGGGTGGTGGTGGTCTGTACGATACAGCAAG 2488 ||||||||| || || ||| | ||| |||||||||| || | || | Sbjct 758 CATGTTCCGCCGATCAGTACCACAGCTACGTGGTCAAGGTGGTCTGTTTGACAAGGCTAA 817 Query 2489 AGGTATTTATACACAGCTTGATCCTGAGTGGAAGCCCCGCTTCAGGGAGAAGGACTTGGA 2548 || |||||||| || || ||| | | || || || || | ||||| || |||| Sbjct 818 AGATATTTATAACCAACTCGATGTCAACTCTAAACCACGATTTCGTGAGAATGAGATGGA 877 Query 2549 AGCTATTTTCCCATCTGGTGCCAAAGTTAAGTGGTCCCACATGGAGTATGAGAAAGATAA 2608 |||| | |||||| || || |||||||||||| ||| || | | ||||| | Sbjct 878 AGCTTTATTCCCAAACGGGGCTAAAGTTAAGTGGCAGTCGATGCAGCACG-TAAAGAACA 936 Query 2609 ATATTCTCA-CCAAGGTCTTCAGTACACCTTTGTCGGTTTTGACGAAGGAACACAGTTTG 2667 | || || || || || | | || ||| | || | ||||||| || ||||||| Sbjct 937 AGCTTGACATTCAGGGCCTAGAATTTACTTTTATAGGCGTAGACGAAGCCACCCAGTTTG 996 Query 2668 AATGGTCACAGATCGAATACCTTATGTCTCGTCTTCGTTCTGAATCTAAATATCCAAGCC 2727 ||||| |||| |||||||| | ||||||||| | ||||| |||||||| || || Sbjct 997 AATGGGAACAGCTCGAATACATGATGTCTCGTTTGCGTTCATCTTCTAAATACCCGTCCC 1056 Query 2728 GTATGGTAATCTCCTGTAACCC 2749 | ||||| || || |||||||| Sbjct 1057 GAATGGTTATGTCATGTAACCC 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302839023668836