Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6476 93.3 3e-14 seq6559 82.4 5e-11 >seq6476 Length=10381176 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/236 (70%), Gaps = 16/236 (7%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| ||||| ||| || || | || || ||| | | Sbjct 5656906 ATGCAAATCTTTGTGAAAACTCTCACTGGCAAAACCATCACCCTCGAAGTTGAAGCCTCT 5656965 Query 27850 GACGATGTACAATCGGTCAAACAAAA---AATAGCC--GACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| | |||| || | || ||||||||||| |||| || Sbjct 5656966 GAC-----ACAATCGAGAACGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCGG 5657020 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCG 27961 | ||||| || | ||||||||||| || ||| | ||| || |||| || | || | Sbjct 5657021 ATCAGCAGCGTCTGATTTTTGCCGGCAAGCAACT---CGAAGATGGCAGGACTCTTTCAG 5657077 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| |||||||| |||||| || | ||||||||| ||||| | || || ||| Sbjct 5657078 ATTATAACATCCAGAAAGAGTCTACGCTCCATTTGGTTCTGCGTCTTCGAGGAGGC 5657133 >seq6559 Length=1815223 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| || ||| | || || || ||| | Sbjct 1625112 ATGCAAATTTTCGTTAAAACCTTAACAGGAAAAACCATCACACTGGAGGTTGAG-GCATC 1625170 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||||| | || |||||| ||||| || || ||||| | || || Sbjct 1625171 TGACACGATCGAGAAC--GTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCCCCAGAT 1625228 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| | || || || ||||| ||||| | || |||| |||| |||| || ||||| Sbjct 1625229 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGACGGCCGCACGCTT-TCTGATTA 1625287 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| |||||||| ||| ||||||||||||||| | | ||||| || Sbjct 1625288 CAACATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGACTTCGTGGTGG 1625338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355525027765476