Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8374 111 2e-19 seq6487 89.7 7e-13 >seq8374 Length=807232 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 48411 TAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAA 48468 ||||| || || | ||||| |||||| || || || |||||||| || || || |||| Sbjct 791816 TAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATTTGAA 791759 Query 48469 ATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAAT 48528 | ||||| ||||| | ||||| ||||| | || ||| || |||| |||| |||| Sbjct 791758 AGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATTAAAT 791699 Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATT 48588 | ||||| || || || ||| ||| || |||||||| || ||||| |||||||||| Sbjct 791698 TTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAATATT 791639 Query 48589 TTTCGTTGGAAGTCAGTTT 48607 | |||| ||| | || || Sbjct 791638 TCTCGTCAGAATTTAGCTT 791620 >seq6487 Length=3923646 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 || || |||||||||||||| ||||| || | |||||||||||||| |||||||| ||| Sbjct 1177012 TTCTTGGTTTCCTTGTGTAGGTTAGACACGTCGATTCTTGCAGCTAGTATAGCATAGTCA 1177071 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATC 78859 ||||| | ||| | || ||||| |||| ||||||| | |||| Sbjct 1177072 GGATGATTTGTCGCCATCGTAGCTGCAGTTTCAGCCGCTAGATTATC 1177118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693993338792320