Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_031045.1 Length=157855 Score E Sequences producing significant alignments: (Bits) Value seq2061 318 6e-82 seq2042 192 6e-44 >seq2061 Length=505 Score = 318 bits (352), Expect = 6e-82 Identities = 339/446 (76%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 145146 CATTTTTATGAAGCAGCAACGATGCC---GCCACCGGATTCGATTTCGCTGAACTCCATA 145202 |||| |||||| || || |||||||| |||||| ||| | |||| |||| | || Sbjct 32 CATTGTTATGACGCGGCCACGATGCCCATGCCACC---TTCCACTTCGGAGAACGCAATG 88 Query 145203 TCCGGTCGAACTGCAGCAAAATCCAAATAAATCCAGTTAATGCTGTACTCAGGCTTCAAC 145262 ||||| || || || || ||||| | || |||||||| |||||||| || || |||| | Sbjct 89 TCCGGACGGACGGCTGCGAAATCGAGGTAGATCCAGTTGATGCTGTATTCTGGTTTCAGC 148 Query 145263 CAAATGCCAGCGACCATCTGGTTTGCCGCGATGATGTCAGCAGTGTTGTTATCTTCATCA 145322 || || || |||| ||| ||||| || || | | ||| | |||||| ||||| ||| Sbjct 149 CAGATACCTGCGATCATTTGGTTGGCGGCTACAACCGAAGCCGGGTTGTTGTCTTCGTCA 208 Query 145323 CACTTGACTTTACCATCGTAAATCGCGCCCATATTTGCCAGCTGGCGAATATATGGACGA 145382 || ||||| ||||||||| || || ||||| ||||||||||| |||||| Sbjct 209 CATTTGACCTTACCATCGACGATTGCACCCATGCCGATCAGCTGGCGAACATATGGGGTG 268 Query 145383 ACCGCATTGCTGAACAGACCACGTGTAAACGCGTCATTGTTCTCACCAAGATAGTATTTG 145442 ||||| ||| |||||| || |||||||| || || ||||| || || |||||||| Sbjct 269 ACCGCGTTGGTGAACAACTGGCGCGTAAACGCATCGTTATTCTCGCCCAGGTAGTATTTA 328 Query 145443 GCGATTGCGGCGATGTTCTGCTCAGCCATGATGAACAGACCACGAACGTTGATGCGGTCA 145502 || || || | |||||| |||||||||||| || |||||| |||||||||||||| Sbjct 329 GCAATGGCAGAGATGTTGGTCTCAGCCATGATAAAAGTACCACGGACGTTGATGCGGTCG 388 Query 145503 AACGCCGACGGGCGGGTCAGGCCAGTTTTGTCACCATACAGGACGATGCCTTCATTGGAG 145562 ||||| |||||||||||||| ||||||||||| |||| |||||||||||| ||| | Sbjct 389 AACGCACTTGGGCGGGTCAGGCCGGTTTTGTCACCGTACAACACGATGCCTTCAGTGGTG 448 Query 145563 AAGGTTACGATGCTGTTGATCTGATT 145588 ||||| ||||||||||||||||| || Sbjct 449 AAGGTAACGATGCTGTTGATCTGGTT 474 >seq2042 Length=482 Score = 192 bits (212), Expect = 6e-44 Identities = 220/296 (74%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 142840 CGGCTCTTAGGGATCATTAGAGCATCATAGAGTTTTTCACGGAAATAATTCACATGGTCC 142899 ||||||||||| ||| | |||||| | || || || ||||| ||||||||||| ||| Sbjct 187 CGGCTCTTAGGAATCTTGAGAGCACCGTACAGCTTGCTGCGGAAGTAATTCACATGATCC 246 Query 142900 ATTTCACCCAATTGATTCCCACCACCAACAGTTGCAATTTCTGTGGCGTTTTGGCCTTCA 142959 |||| |||| || | || ||||| | || ||||| || ||||| || || ||| Sbjct 247 ATTTGGCCCAGCTGGTCACCGCCACCGATGGTGCTTATTTCGGTCGCGTTCTGTCCCTCA 306 Query 142960 CGACGAGGCAACCAATAATCCTCTGCAATACCCATAAGATGGGCATTACCTGTTATCTTA 143019 ||||| |||| ||| || ||||| || |||||||| || || | | ||| || ||| Sbjct 307 CGACGTGGCATCCAGTAGTCCTCAGCGATACCCATGAGGTGAGTGTCGCCTTGTACCTTG 366 Query 143020 CCAGTGGTGCGGTCATATGCGTTGCGGTTTTTGAATTTACCCATCATCATGGTCATGTAT 143079 || || |||| ||||| | ||| || || || ||||||||||||| ||| || Sbjct 367 CCGGTCTGACGGTTATATGACAGGTTGTTCTTAAACTTGCCCATCATCATGGCCATATAC 426 Query 143080 TCTTCAGCAGATTTCTTACCGAGAGTACCGACGTCAAGATAGAATGCGCGTTTCTC 143135 |||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| Sbjct 427 TCTTCAGCGGATTTCTTACCCAACATACCGACGTCAAGGTAGAATGCGCGCTTCTC 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504516955471200