Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3773 93.3 9e-14
seq36177 91.5 3e-13
seq260 84.2 5e-11
>seq3773
Length=92101
Score = 93.3 bits (102), Expect = 9e-14
Identities = 204/304 (67%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 61188 TACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG 61247
|||| || ||||||| | ||||| || || | || | ||||| | || ||| |
Sbjct 53178 TACGGTTTCTGGATTGTCATCAATTATCGGGAAGCCTACGACATGTTCGCCTGCAACGGG 53237
Query 61248 ATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACG 61307
|| ||||| ||||||||||| |||| | | |||||||| || || || ||
Sbjct 53238 ATACTCTTCAACCACGAGAGTCCACGGCGAGGCGAAAACTTTGTGACACGCAAGATAACA 53297
Query 61308 AAGGCGGTTGCAAATATTTTTAACGGTGTCGAAA--AATGCATGTATCTAGGAAACATAG 61365
| || || || || || || | || || ||| | | | || || || | |
Sbjct 53298 CGATCTGTGGCCAAGATATT--ACTGAATCAAATGGAATACTTTGAGCTCGGCAATTTGG 53355
Query 61366 ACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGC 61425
|||| || | ||||||||| |||| || ||| | ||||| |||||| |||||||||
Sbjct 53356 ACTCAAAGCGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGTGGATGATGTTGC 53415
Query 61426 AACAAGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAAT 61485
||| || | ||||| |||||| |||||||| || ||| | || ||||| || ||||
Sbjct 53416 AACGGGAGAGTCCAGCTGACTATGTTATTGCAACCGGAGAAACACATAGTGTACGAGAAT 53475
Query 61486 TCGT 61489
| ||
Sbjct 53476 TTGT 53479
>seq36177
Length=792
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 240 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 181
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 180 CCCCACGTTGGGC 168
>seq260
Length=58366
Score = 84.2 bits (92), Expect = 5e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618
||||||||| | | ||| || || |||||||| || || ||||| | ||||| |||
Sbjct 6916 GGATTATAATTCGCAATTTTTGTTGACCAACCCGTACCGATACCTTCGGCTCCATTCACC 6857
Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATC 281674
|||| |||| ||||| || | ||| ||| | ||||||||||| | |||||||||
Sbjct 6856 AAAACCATCGGAATAATCGGAATATACCATACAGGTTCAATTTTCTGACCATCATC 6801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057172530164210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |