Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3773 93.3 9e-14 seq36177 91.5 3e-13 seq260 84.2 5e-11 >seq3773 Length=92101 Score = 93.3 bits (102), Expect = 9e-14 Identities = 204/304 (67%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 61188 TACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG 61247 |||| || ||||||| | ||||| || || | || | ||||| | || ||| | Sbjct 53178 TACGGTTTCTGGATTGTCATCAATTATCGGGAAGCCTACGACATGTTCGCCTGCAACGGG 53237 Query 61248 ATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACG 61307 || ||||| ||||||||||| |||| | | |||||||| || || || || Sbjct 53238 ATACTCTTCAACCACGAGAGTCCACGGCGAGGCGAAAACTTTGTGACACGCAAGATAACA 53297 Query 61308 AAGGCGGTTGCAAATATTTTTAACGGTGTCGAAA--AATGCATGTATCTAGGAAACATAG 61365 | || || || || || || | || || ||| | | | || || || | | Sbjct 53298 CGATCTGTGGCCAAGATATT--ACTGAATCAAATGGAATACTTTGAGCTCGGCAATTTGG 53355 Query 61366 ACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGC 61425 |||| || | ||||||||| |||| || ||| | ||||| |||||| ||||||||| Sbjct 53356 ACTCAAAGCGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGTGGATGATGTTGC 53415 Query 61426 AACAAGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAAT 61485 ||| || | ||||| |||||| |||||||| || ||| | || ||||| || |||| Sbjct 53416 AACGGGAGAGTCCAGCTGACTATGTTATTGCAACCGGAGAAACACATAGTGTACGAGAAT 53475 Query 61486 TCGT 61489 | || Sbjct 53476 TTGT 53479 >seq36177 Length=792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 240 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 181 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 180 CCCCACGTTGGGC 168 >seq260 Length=58366 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||||||| | | ||| || || |||||||| || || ||||| | ||||| ||| Sbjct 6916 GGATTATAATTCGCAATTTTTGTTGACCAACCCGTACCGATACCTTCGGCTCCATTCACC 6857 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATC 281674 |||| |||| ||||| || | ||| ||| | ||||||||||| | ||||||||| Sbjct 6856 AAAACCATCGGAATAATCGGAATATACCATACAGGTTCAATTTTCTGACCATCATC 6801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057172530164210